Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 0.0e+00 1409.8 726 100.0
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 0.0e+00 1362.8 727 96.3
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 0.0e+00 1333.2 726 93.5
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 0.0e+00 1310.4 726 92.0
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 0.0e+00 1268.4 726 89.7
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 0.0e+00 1265.0 727 89.7
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 0.0e+00 1265.0 727 89.7
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 0.0e+00 1265.0 727 89.7
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 0.0e+00 1258.0 728 89.1
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 0.0e+00 1257.7 728 89.1
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 0.0e+00 1252.3 726 88.3
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 0.0e+00 1209.9 726 85.7
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 0.0e+00 1166.8 727 82.5
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 6.7e-283 977.2 725 68.1
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 4.1e-280 968.0 735 67.1
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 1.4e-277 959.5 723 67.4
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 1.0e-275 953.4 729 67.5
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 8.7e-275 950.3 726 66.7
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 6.3e-273 944.1 723 65.7
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 2.4e-272 942.2 723 65.4
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 6.9e-272 940.6 723 64.6
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 2.6e-271 938.7 727 65.2
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 5.9e-271 937.6 722 65.4
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 5.9e-271 937.6 722 66.2
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 1.1e-269 933.3 723 65.7
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 3.2e-269 931.8 726 65.7
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 3.2e-269 931.8 723 64.5
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 9.4e-269 930.2 723 65.4
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 1.2e-268 929.9 722 64.7
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 2.7e-268 928.7 723 66.0
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 7.4e-266 920.6 716 64.4
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 6.3e-265 917.5 723 66.0
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 7.7e-263 910.6 723 64.2
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 5.0e-262 907.9 723 63.6
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 6.5e-262 907.5 723 64.0
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 1.4e-261 906.4 729 64.6
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 2.7e-260 902.1 728 64.6
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 3.6e-260 901.7 725 63.7
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 7.9e-260 900.6 715 63.1
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.4e-259 899.8 725 64.3
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 1.8e-259 899.4 726 62.5
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 2.3e-259 899.0 737 63.6
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 3.0e-259 898.7 722 64.4
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 1.7e-257 892.9 835 56.8
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 2.2e-257 892.5 718 64.1
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 2.4e-256 889.0 725 63.0
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.4e-256 889.0 725 63.0
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 1.2e-255 886.7 726 63.1
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.5e-255 886.3 725 62.9
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.9e-253 879.4 725 62.3
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 3.2e-253 878.6 731 63.2
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 1.8e-251 872.8 791 59.2
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 1.3e-249 866.7 728 60.2
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 1.7e-249 866.3 720 61.7
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 1.4e-248 863.2 723 62.8
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 3.5e-247 858.6 722 61.5
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 5.9e-247 857.8 719 60.6
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 6.5e-246 854.4 720 61.1
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 8.5e-246 854.0 720 60.8
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 4.0e-243 845.1 714 59.8
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 1.5e-242 843.2 723 59.6
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 4.4e-242 841.6 726 60.6
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 4.4e-242 841.6 719 59.7
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 5.7e-242 841.3 724 59.9
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 2.2e-241 839.3 722 60.5
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 8.3e-241 837.4 722 59.4
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 2.4e-240 835.9 723 58.4
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 4.1e-240 835.1 720 60.6
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 1.3e-238 830.1 716 60.5
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 8.5e-238 827.4 726 58.4
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 1.9e-237 826.2 695 59.9
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 4.4e-234 815.1 619 66.1
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 1.3e-233 813.5 723 58.6
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 2.8e-233 812.4 723 59.8
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 3.6e-228 795.4 722 56.8
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 1.8e-227 793.1 724 57.5
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 4.4e-218 761.9 651 60.4
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 8.1e-212 741.1 726 52.9
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 8.1e-212 741.1 726 53.0
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 1.9e-200 703.4 709 52.2
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 3.2e-200 702.6 431 82.6
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 3.3e-189 666.0 663 52.5
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 3.4e-186 656.0 477 66.5
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 7.6e-186 654.8 588 59.4
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 1.3e-182 644.0 737 49.4
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 8.1e-180 634.8 391 82.6
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 1.7e-161 573.9 472 63.1
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 7.4e-157 558.5 677 45.6
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 9.7e-157 558.1 663 46.5
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 1.1e-155 554.7 439 66.1
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.5e-154 550.8 669 48.1
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 3.2e-152 543.1 664 44.0
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 2.0e-149 533.9 593 48.7
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 5.7e-149 532.3 296 91.6
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 4.8e-148 529.3 670 43.1
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 1.5e-133 481.1 664 42.0
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 5.5e-120 436.0 424 53.8
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 2.3e-118 430.6 507 46.5
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 6.8e-118 429.1 391 57.8
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.4e-110 404.8 478 48.3
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 5.2e-110 402.9 374 55.1
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 1.7e-105 387.9 313 67.7
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 6.6e-105 386.0 663 34.5
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 1.2e-101 375.2 337 58.5
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 1.0e-97 362.1 327 61.5
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.5e-93 348.2 584 38.7
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 6.4e-92 342.8 295 56.6
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 1.2e-85 322.0 229 70.7
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 9.9e-85 318.9 264 63.3
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 1.7e-73 281.6 236 58.5
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 4.5e-61 240.4 152 78.3
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 4.5e-61 240.4 212 56.6
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 1.7e-52 211.8 162 68.5
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 5.0e-36 157.1 148 52.7
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 1.5e-32 145.6 136 54.4
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 1.1e-24 119.4 743 24.1
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 1.2e-18 99.4 69 65.2
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 1.6e-18 99.0 100 50.0
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 4.5e-13 80.9 66 56.1
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 3.1e-06 58.2 45 60.0


User provided reference genes

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