Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G25130 Arabidopsis lyrata HOM05D001443 ORTHO05D038697 4.0e-95 352.4 358 100.0
AT5G50940 Arabidopsis thaliana HOM05D001443 ORTHO05D038697 9.6e-57 224.9 397 47.6
AL6G43850 Arabidopsis lyrata HOM05D001443 ORTHO05D001352 4.7e-11 73.2 112 42.0
Cc10_g08730 Coffea canephora HOM05D001443 ORTHO05D001352 3.0e-10 70.5 83 43.4
AT4G10070 Arabidopsis thaliana HOM05D001443 ORTHO05D001352 8.8e-10 68.9 125 36.8
THA.LOC104815830 Tarenaya hassleriana HOM05D001443 ORTHO05D001352 1.5e-09 68.2 86 44.2
Cpa.g.sc21.81 Carica papaya HOM05D001443 ORTHO05D001352 2.0e-09 67.8 72 48.6
Aa31LG9G11930 Aethionema arabicum HOM05D001443 ORTHO05D001352 2.6e-09 67.4 72 50.0
Lalb_Chr16g0376691 Lupinus albus HOM05D001443 ORTHO05D001352 2.6e-09 67.4 72 48.6
Lj9A698G56 Lonicera japonica HOM05D001443 ORTHO05D001352 3.3e-09 67.0 115 37.4
RcHm_v2.0_Chr6g0306891 Rosa chinensis HOM05D001443 ORTHO05D001352 3.3e-09 67.0 78 47.4
COL.COLO4_24569 Corchorus olitorius HOM05D001443 ORTHO05D001352 4.4e-09 66.6 72 45.8
SGA_v2.0_scaffold118G32607 Striga asiatica HOM05D001443 ORTHO05D001352 4.4e-09 66.6 103 40.8
Ca_24472_v3 Cicer arietinum L. HOM05D001443 ORTHO05D001352 5.7e-09 66.2 72 47.2
Ciclev10018931m.g Citrus clementina HOM05D001443 ORTHO05D001352 7.4e-09 65.9 76 43.4
MBI06_g21946_MAGBIO Magnolia biondii HOM05D001443 ORTHO05D001352 7.4e-09 65.9 72 51.4
Medtr5g008420 Medicago truncatula HOM05D001443 ORTHO05D001352 7.4e-09 65.9 72 45.8
Carub.0006s2863 Capsella rubella HOM05D001443 ORTHO05D001352 9.7e-09 65.5 72 48.6
Duzib116G0283 Durio zibethinus HOM05D001443 ORTHO05D001352 9.7e-09 65.5 108 38.0
TPR.G38046 Trifolium pratense HOM05D001443 ORTHO05D001352 9.7e-09 65.5 72 45.8
Sed0023582 Sechium edule HOM05D001443 ORTHO05D001352 1.3e-08 65.1 83 44.6
CDE08G1264 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 1.7e-08 64.7 72 47.2
FAN15G2006 Fragaria x ananassa HOM05D001443 ORTHO05D001352 1.7e-08 64.7 72 45.8
Solyc11g040370.2 Solanum lycopersicum HOM05D001443 ORTHO05D001352 1.7e-08 64.7 72 45.8
Sopen11g018360 Solanum pennellii HOM05D001443 ORTHO05D001352 1.7e-08 64.7 72 45.8
PGSC0003DMG400011914 Solanum tuberosum HOM05D001443 ORTHO05D001352 1.7e-08 64.7 72 45.8
Thecc.08G177400 Theobroma cacao HOM05D001443 ORTHO05D001352 1.7e-08 64.7 72 44.4
Nitab4.5_0000213g0200 Nicotiana tabacum HOM05D001443 ORTHO05D001352 2.2e-08 64.3 72 45.8
Nitab4.5_0001155g0030 Nicotiana tabacum HOM05D001443 ORTHO05D001352 2.2e-08 64.3 72 45.8
QL09p002051 Quercus lobata HOM05D001443 ORTHO05D001352 2.2e-08 64.3 72 45.8
TAR381G0091 Trochodendron aralioides HOM05D001443 ORTHO05D001352 2.2e-08 64.3 78 44.9
CAN.G227.12 Capsicum annuum HOM05D001443 ORTHO05D001352 2.8e-08 63.9 118 34.7
Eucgr.C00625 Eucalyptus grandis HOM05D001443 ORTHO05D001352 2.8e-08 63.9 72 47.2
Potri.019G072500 Populus trichocarpa HOM05D001443 ORTHO05D001352 2.8e-08 63.9 72 45.8
Rhsim08G0115800 Rhododendron simsii HOM05D001443 ORTHO05D001352 2.8e-08 63.9 121 36.4
Atru.chr13.2486 Acer truncatum HOM05D001443 ORTHO05D001352 3.7e-08 63.5 72 44.4
ATR1089G081 Amborella trichopoda HOM05D001443 ORTHO05D001352 3.7e-08 63.5 72 45.8
ATR1089G103 Amborella trichopoda HOM05D001443 ORTHO05D001352 3.7e-08 63.5 72 45.8
Gohir.A13G115900 Gossypium hirsutum HOM05D001443 ORTHO05D001352 3.7e-08 63.5 72 44.4
Gohir.D13G119100 Gossypium hirsutum HOM05D001443 ORTHO05D001352 3.7e-08 63.5 72 44.4
Gorai.013G133600 Gossypium raimondii HOM05D001443 ORTHO05D001352 3.7e-08 63.5 72 44.4
LjContig00222g0010511 Lotus japonicus HOM05D001443 ORTHO05D001352 3.7e-08 63.5 72 48.6
Nn5g27279 Nelumbo nucifera HOM05D001443 ORTHO05D001352 3.7e-08 63.5 72 47.2
Sc26g0002200 Simmondsia chinensis HOM05D001443 ORTHO05D001352 3.7e-08 63.5 83 41.0
GSVIVG01036378001 Vitis vinifera HOM05D001443 ORTHO05D001352 3.7e-08 63.5 72 47.2
CANSAT25G1707 Cannabis sativa HOM05D001443 ORTHO05D001352 4.8e-08 63.2 115 35.7
CDE04G2080 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 4.8e-08 63.2 75 44.0
Eucgr.I00053 Eucalyptus grandis HOM05D001443 ORTHO05D001352 4.8e-08 63.2 72 45.8
Gohir.A05G253600 Gossypium hirsutum HOM05D001443 ORTHO05D001352 4.8e-08 63.2 72 45.8
MD08G1108100 Malus domestica HOM05D001443 ORTHO05D001352 4.8e-08 63.2 72 45.8
MD15G1088600 Malus domestica HOM05D001443 ORTHO05D001352 4.8e-08 63.2 72 45.8
Manes.02G207700 Manihot esculenta HOM05D001443 ORTHO05D001352 4.8e-08 63.2 72 44.4
Prupe.1G442700 Prunus persica HOM05D001443 ORTHO05D001352 4.8e-08 63.2 72 45.8
SHI16720 Sapria himalayana HOM05D001443 ORTHO05D001352 4.8e-08 63.2 120 34.2
TWI12G1153 Tripterygium wilfordii HOM05D001443 ORTHO05D001352 4.8e-08 63.2 71 46.5
unitig_37.g13079 Utricularia gibba HOM05D005243 ORTHO05D006670 4.8e-08 63.2 69 50.7
AL1G48090 Arabidopsis lyrata HOM05D001443 ORTHO05D001352 6.3e-08 62.8 72 48.6
FvH4_2g35080 Fragaria vesca HOM05D001443 ORTHO05D001352 6.3e-08 62.8 72 44.4
FAN20G1854 Fragaria x ananassa HOM05D001443 ORTHO05D001352 6.3e-08 62.8 72 44.4
FAN27G0488 Fragaria x ananassa HOM05D001443 ORTHO05D001352 6.3e-08 62.8 72 44.4
vmacro00154 Vaccinium macrocarpon HOM05D001443 ORTHO05D001352 6.3e-08 62.8 93 37.6
AT1G33680 Arabidopsis thaliana HOM05D001443 ORTHO05D001352 8.2e-08 62.4 72 48.6
CSS0047769 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 8.2e-08 62.4 72 47.2
CARHR194380 Cardamine hirsuta HOM05D001443 ORTHO05D001352 8.2e-08 62.4 72 48.6
CDE07G0800 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 8.2e-08 62.4 74 43.2
Duzib268G0114 Durio zibethinus HOM05D001443 ORTHO05D001352 8.2e-08 62.4 72 43.1
Potri.013G099800 Populus trichocarpa HOM05D001443 ORTHO05D001352 8.2e-08 62.4 72 43.1
SGA_v2.0_scaffold24G10640 Striga asiatica HOM05D001443 ORTHO05D001352 8.2e-08 62.4 74 44.6
HPP92_009208 Vanilla planifolia HOM05D001443 ORTHO05D001352 8.2e-08 62.4 132 31.8
CiPaw.03G015500 Carya illinoinensis HOM05D001443 ORTHO05D001352 1.1e-07 62.0 114 34.2
CiPaw.04G009600 Carya illinoinensis HOM05D001443 ORTHO05D001352 1.1e-07 62.0 72 44.4
Dinv16105 Davidia involucrata HOM05D001443 ORTHO05D001352 1.1e-07 62.0 72 45.8
Gorai.009G267000 Gossypium raimondii HOM05D001443 ORTHO05D001352 1.1e-07 62.0 72 44.4
HanXRQChr04g0102931 Helianthus annuus HOM05D001443 ORTHO05D001352 1.1e-07 62.0 108 31.5
Hma1.2p1_0238F.1_g099710 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 1.1e-07 62.0 72 45.8
Hma1.2p1_0468F.1_g158710 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 1.1e-07 62.0 72 45.8
ClCG08G001060 Citrullus lanatus HOM05D001443 ORTHO05D001352 1.4e-07 61.6 84 40.5
Migut.C01374 Erythranthe guttata HOM05D001443 ORTHO05D001352 1.4e-07 61.6 72 47.2
Os08g0110800 Oryza sativa ssp. japonica HOM05D001443 ORTHO05D001352 1.4e-07 61.6 82 41.5
Sed0008630 Sechium edule HOM05D001443 ORTHO05D001352 1.4e-07 61.6 72 45.8
VMungo1215G2872 Vigna mungo HOM05D001443 ORTHO05D001352 1.4e-07 61.6 77 45.5
DCAR_014073 Daucus carota HOM05D001443 ORTHO05D001352 1.8e-07 61.2 72 45.8
Mapoly0006s0255 Marchantia polymorpha HOM05D001443 ORTHO05D001352 1.8e-07 61.2 121 33.1
Peaxi162Scf00078g00548 Petunia axillaris HOM05D001443 ORTHO05D001352 1.8e-07 61.2 116 32.8
SEGI_30547 Sequoiadendron giganteum HOM05D001443 ORTHO05D001352 1.8e-07 61.2 81 39.5
AagrBONN_evm.TU.Sc2ySwM_368.1066 Anthoceros agrestis HOM05D001443 ORTHO05D001352 2.4e-07 60.8 91 39.6
MELO3C022173.2 Cucumis melo HOM05D001443 ORTHO05D001352 2.4e-07 60.8 83 39.8
CsaV3_5G039940 Cucumis sativus L. HOM05D001443 ORTHO05D001352 2.4e-07 60.8 83 39.8
Pp3c11_17830 Physcomitrium patens HOM05D001443 ORTHO05D001352 2.4e-07 60.8 73 43.8
SalBow7G1995 Salvia bowleyana HOM05D001443 ORTHO05D001352 2.4e-07 60.8 103 38.8
Aa31LG6G8000 Aethionema arabicum HOM05D001443 ORTHO05D001352 3.1e-07 60.5 72 43.1
Aqoxy5G00837 Aquilegia oxysepala HOM05D001443 ORTHO05D001352 3.1e-07 60.5 72 45.8
arahy.Tifrunner.gnm1.ann1.D93XQM Arachis hypogaea HOM05D001443 ORTHO05D001352 3.1e-07 60.5 72 44.4
arahy.Tifrunner.gnm1.ann1.EVFJ1T Arachis hypogaea HOM05D001443 ORTHO05D001352 3.1e-07 60.5 72 44.4
Glyma.01G230700 Glycine max HOM05D001443 ORTHO05D001352 3.1e-07 60.5 72 44.4
Glyma.11G013900 Glycine max HOM05D001443 ORTHO05D001352 3.1e-07 60.5 72 44.4
Lalb_Chr09g0320521 Lupinus albus HOM05D001443 ORTHO05D001352 3.1e-07 60.5 72 47.2
Sabra19G0083900 Salix brachista HOM05D001443 ORTHO05D001352 3.1e-07 60.5 72 43.1
Zm00001eb174080 Zea mays HOM05D001443 ORTHO05D001352 3.1e-07 60.5 74 45.9
Aqoxy5G01427 Aquilegia oxysepala HOM05D001443 ORTHO05D001352 4.1e-07 60.1 81 42.0
Pp3c7_11410 Physcomitrium patens HOM05D001443 ORTHO05D001352 4.1e-07 60.1 89 39.3
Thhalv10006898m.g Eutrema salsugineum HOM05D001443 ORTHO05D001352 5.3e-07 59.7 72 47.2
Rhsim11G0045600 Rhododendron simsii HOM05D001443 ORTHO05D001352 5.3e-07 59.7 78 39.7
vmacro17838 Vaccinium macrocarpon HOM05D001443 ORTHO05D001352 5.3e-07 59.7 110 37.3
Ah.09g227550 Amaranthus hybridus HOM05D001443 ORTHO05D001352 7.0e-07 59.3 72 43.1
Hund09167 Selenicereus undatus HOM05D001443 ORTHO05D001352 7.0e-07 59.3 72 41.7
TAR624G1247 Trochodendron aralioides HOM05D001443 ORTHO05D001352 7.0e-07 59.3 78 42.3
vmacro00155 Vaccinium macrocarpon HOM05D001443 ORTHO05D001352 7.0e-07 59.3 79 39.2
Duzib168G0433 Durio zibethinus HOM05D001443 ORTHO05D001352 9.1e-07 58.9 72 44.4
Lsat_1_v5_gn_1_25041 Lactuca sativa HOM05D001443 ORTHO05D001352 9.1e-07 58.9 72 45.8
Oeu029090.2 Olea europaea HOM05D001443 ORTHO05D001352 9.1e-07 58.9 72 44.4
TWI75G1723 Tripterygium wilfordii HOM05D001443 ORTHO05D001352 9.1e-07 58.9 79 43.0
Zm00001eb260490 Zea mays HOM05D001443 ORTHO05D001352 9.1e-07 58.9 74 45.9
Cfa008085 Carpinus fangiana HOM05D001443 ORTHO05D001352 1.2e-06 58.5 72 44.4
Haze_13924 Corylus avellana HOM05D007884 ORTHO05D009968 1.2e-06 58.5 72 44.4
ECA232G0117 Erigeron canadensis HOM05D001443 ORTHO05D001352 1.2e-06 58.5 73 42.5
PSO017G5759 Papaver somniferum HOM05D001443 ORTHO05D001352 1.2e-06 58.5 82 37.8
Sabra13G0085600 Salix brachista HOM05D001443 ORTHO05D001352 1.2e-06 58.5 72 40.3
Sp1g29050 Schrenkiella parvula HOM05D001443 ORTHO05D001352 1.2e-06 58.5 72 45.8
EL10Ac8g18563 Beta vulgaris HOM05D001443 ORTHO05D001352 1.5e-06 58.2 71 42.3
Gohir.A06G088300 Gossypium hirsutum HOM05D001443 ORTHO05D001352 1.5e-06 58.2 73 41.1
Gohir.D06G088400 Gossypium hirsutum HOM05D001443 ORTHO05D001352 1.5e-06 58.2 73 41.1
Gorai.010G102100 Gossypium raimondii HOM05D001443 ORTHO05D001352 1.5e-06 58.2 73 41.1
Lj7C421G5 Lonicera japonica HOM05D001443 ORTHO05D001352 1.5e-06 58.2 72 43.1
PSO170G5444 Papaver somniferum HOM05D001443 ORTHO05D001352 1.5e-06 58.2 76 40.8
Prupe.8G115800 Prunus persica HOM05D001443 ORTHO05D001352 1.5e-06 58.2 81 39.5
CSS0005108 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 2.0e-06 57.8 72 44.4
CSS0007665 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 2.0e-06 57.8 72 44.4
PGR031G2437 Punica granatum HOM05D001443 ORTHO05D001352 2.0e-06 57.8 72 43.1
Gohir.A05G043300 Gossypium hirsutum HOM05D001443 ORTHO05D001352 2.6e-06 57.4 72 41.7
Gohir.D05G045000 Gossypium hirsutum HOM05D001443 ORTHO05D001352 2.6e-06 57.4 72 41.7
Gorai.009G046100 Gossypium raimondii HOM05D001443 ORTHO05D001352 2.6e-06 57.4 72 41.7
Actinidia29385 Actinidia chinensis HOM05D001443 ORTHO05D001352 3.5e-06 57.0 91 38.5
ECA247G3095 Erigeron canadensis HOM05D001443 ORTHO05D001352 3.5e-06 57.0 72 44.4
Oeu029405.1 Olea europaea HOM05D001443 ORTHO05D001352 3.5e-06 57.0 72 43.1
Oeu018652.2 Olea europaea HOM05D001443 ORTHO05D001352 4.5e-06 56.6 81 39.5
RcHm_v2.0_Chr6g0259341 Rosa chinensis HOM05D001443 ORTHO05D001352 4.5e-06 56.6 72 44.4
BcaB07g32996 Brassica carinata HOM05D001443 ORTHO05D001352 5.9e-06 56.2 74 43.2
Duzib150G1159 Durio zibethinus HOM05D001443 ORTHO05D001352 5.9e-06 56.2 72 41.7
Eucgr.C03020 Eucalyptus grandis HOM05D001443 ORTHO05D001352 5.9e-06 56.2 72 41.7
HanXRQChr13g0410681 Helianthus annuus HOM05D001443 ORTHO05D001352 5.9e-06 56.2 75 41.3
MD00G1050700 Malus domestica HOM05D001443 ORTHO05D001352 5.9e-06 56.2 81 39.5
MD10G1088600 Malus domestica HOM05D001443 ORTHO05D001352 5.9e-06 56.2 81 39.5
MBI16_g19908_MAGBIO Magnolia biondii HOM05D001443 ORTHO05D001352 7.7e-06 55.8 95 33.7
HPP92_002838 Vanilla planifolia HOM05D001443 ORTHO05D001352 7.7e-06 55.8 73 38.4


User provided reference genes

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