Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 3.9e-117 424.9 220 100.0
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.3e-114 415.6 220 97.3
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 9.2e-111 403.7 220 93.6
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 6.0e-110 401.0 220 92.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-103 380.2 227 88.1
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.1e-103 380.2 227 88.1
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.4e-103 379.0 227 89.0
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 3.2e-103 378.6 226 88.1
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 4.2e-103 378.3 226 89.4
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.2e-102 376.7 226 88.9
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.6e-102 376.3 227 86.8
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 2.7e-102 375.6 227 86.8
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.6e-101 370.9 226 86.7
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 8.7e-101 370.5 228 85.5
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.1e-100 370.2 226 88.1
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.1e-99 365.9 223 86.5
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 7.1e-95 350.9 231 80.1
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 3.1e-90 335.5 228 77.2
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 7.4e-84 314.3 219 72.6
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 7.4e-84 314.3 219 72.1
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 9.6e-84 313.9 219 72.1
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.0e-81 306.2 222 69.8
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 3.8e-80 302.0 222 69.4
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 4.2e-79 298.5 229 67.7
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.2e-79 298.5 222 68.9
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 2.1e-78 296.2 226 66.4
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 7.9e-78 294.3 226 65.9
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.0e-77 293.9 226 65.5
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.8e-77 293.1 219 67.1
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.5e-76 290.0 214 70.1
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.5e-76 290.0 229 65.9
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.9e-76 289.7 230 64.8
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 3.3e-76 288.9 218 66.1
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.3e-76 288.5 163 89.6
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 9.6e-76 287.3 222 66.2
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.1e-75 286.2 221 66.1
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 4.8e-75 285.0 220 65.5
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.1e-74 283.9 226 65.0
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.1e-74 283.9 219 65.8
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.4e-74 283.5 225 64.9
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.2e-73 280.4 221 64.7
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.0e-73 279.6 221 63.3
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.9e-73 278.1 220 62.7
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 5.9e-73 278.1 220 65.9
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.6e-73 277.7 221 62.9
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.0e-72 277.3 221 65.2
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 1.0e-72 277.3 217 63.6
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.3e-72 276.9 219 63.0
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.7e-72 276.6 220 64.5
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 3.8e-72 275.4 219 62.6
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 3.8e-72 275.4 233 60.5
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 8.5e-72 274.2 214 63.6
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.1e-71 273.9 230 62.2
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.1e-71 273.9 235 59.6
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.9e-71 273.1 242 58.3
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.9e-71 273.1 222 61.7
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.5e-71 272.7 228 61.8
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.2e-71 271.9 217 62.2
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.6e-70 270.0 223 60.1
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.7e-70 269.2 234 58.1
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.1e-70 268.1 230 59.1
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 7.9e-70 267.7 228 60.1
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.0e-69 267.3 228 61.0
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.8e-69 266.5 227 59.0
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.3e-69 266.2 227 60.4
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 3.0e-69 265.8 229 59.4
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.9e-69 265.4 227 59.9
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 3.9e-69 265.4 216 63.9
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 3.9e-69 265.4 216 60.6
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 2.5e-68 262.7 234 56.8
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.5e-68 262.7 208 62.5
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.3e-68 262.3 219 62.6
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 4.3e-68 261.9 213 62.4
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.7e-68 261.5 224 62.1
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 9.7e-68 260.8 234 58.5
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 3.7e-67 258.8 218 61.9
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 3.7e-67 258.8 221 60.2
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 4.8e-67 258.5 213 62.0
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 6.3e-67 258.1 223 60.1
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 8.2e-67 257.7 185 67.0
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.1e-66 257.3 221 57.5
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 1.4e-66 256.9 226 56.2
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.4e-66 256.9 221 57.0
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 2.4e-66 256.1 224 59.4
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 3.1e-66 255.8 231 54.5
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 9.0e-66 254.2 210 61.4
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.5e-65 253.4 227 59.0
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.0e-65 253.1 226 56.2
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.6e-65 252.7 230 57.4
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 2.6e-65 252.7 212 61.3
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 5.9e-65 251.5 221 59.3
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 7.7e-65 251.1 222 59.5
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.0e-64 250.8 235 54.9
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.3e-64 250.4 258 54.3
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.7e-64 250.0 222 58.1
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 1.4e-63 246.9 215 60.0
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.5e-63 246.1 216 56.9
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 4.2e-63 245.4 272 50.7
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 5.5e-63 245.0 218 59.2
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 7.2e-63 244.6 222 57.7
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 9.4e-63 244.2 227 56.8
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.2e-62 243.8 221 57.9
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.1e-62 243.0 237 54.0
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 3.6e-62 242.3 222 57.7
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.8e-61 240.0 230 53.5
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 2.6e-60 236.1 214 56.5
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 4.4e-60 235.3 222 56.3
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 2.2e-59 233.0 221 57.0
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 5.9e-57 224.9 215 53.0
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.3e-56 223.8 163 68.7
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.9e-56 222.6 220 52.3
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 8.5e-56 221.1 228 51.8
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.6e-54 216.9 222 52.7
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.4e-53 213.8 247 47.0
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.8e-53 213.4 244 47.5
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.7e-51 206.8 221 51.6
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 2.2e-51 206.5 184 65.2
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.8e-50 203.4 161 65.2
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 4.1e-50 202.2 224 50.9
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.3e-48 197.2 162 64.2
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.7e-48 196.8 170 58.2
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 2.5e-47 193.0 214 47.7
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 5.5e-47 191.8 145 67.6
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.1e-46 189.9 176 56.2
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 8.0e-46 188.0 169 56.2
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.0e-45 187.6 141 68.8
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.8e-45 186.8 154 63.0
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 9.7e-44 181.0 214 50.0
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 1.1e-39 167.5 224 43.3
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 2.5e-39 166.4 145 58.6
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.5e-36 157.1 214 42.5
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 2.6e-36 156.4 220 48.6
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.7e-35 153.7 217 41.0
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 2.4e-34 149.8 236 39.4
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 4.1e-34 149.1 190 44.2
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.0e-33 146.7 196 42.9
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 5.9e-33 145.2 116 64.7
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 1.7e-32 143.7 115 63.5
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 2.9e-32 142.9 115 63.5
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 7.2e-31 138.3 191 42.4
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 8.0e-30 134.8 220 35.5
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 6.8e-29 131.7 126 54.8
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.2e-28 131.0 144 47.9
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.6e-28 129.8 141 50.4
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 4.4e-28 129.0 221 34.4
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.1e-26 124.4 144 47.9
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 1.4e-26 124.0 203 44.3
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 1.4e-26 124.0 203 44.3
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.6e-23 112.1 90 62.2
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 1.6e-22 110.5 190 43.2
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 4.0e-21 105.9 220 38.6
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 6.8e-21 105.1 184 37.0
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 3.4e-20 102.8 98 53.1
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 9.8e-20 101.3 53 94.3
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.3e-19 100.9 171 43.3
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 6.4e-19 98.6 52 92.3
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 8.3e-19 98.2 53 92.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 8.3e-19 98.2 53 92.5
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.2e-17 94.4 129 42.6
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 7.8e-17 91.7 151 36.4
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.9e-16 89.4 58 75.9
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 8.6e-16 88.2 79 57.0
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.6e-15 85.5 76 55.3
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 7.3e-15 85.1 70 57.1
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.2e-14 84.3 98 44.9
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.6e-14 84.0 82 53.7
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.6e-14 84.0 82 53.7
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.2e-14 82.0 163 33.1
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.2e-14 82.0 50 80.0
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.8e-13 80.5 53 73.6
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 2.3e-13 80.1 68 55.9
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.1e-13 79.7 75 56.0
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 1.2e-12 77.8 74 54.1
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 1.7e-11 73.9 79 53.2
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.2e-11 73.6 77 44.2
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 4.6e-09 65.9 82 41.5
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 7.8e-09 65.1 79 46.8
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 8.6e-08 61.6 122 40.2
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 4.3e-07 59.3 70 42.9
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 9.5e-07 58.2 53 52.8


User provided reference genes

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