Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G24460 Arabidopsis lyrata HOM05D005518 ORTHO05D001269 8.3e-300 1033.1 589 100.0
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 7.6e-253 877.1 590 88.3
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 4.4e-232 808.1 624 79.0
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 9.7e-232 807.0 598 79.8
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 1.3e-228 796.6 594 80.8
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 6.1e-226 787.7 598 77.8
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 2.0e-216 756.1 590 75.9
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 5.9e-213 744.6 583 75.5
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 3.8e-212 741.9 590 74.1
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 2.8e-207 725.7 596 72.7
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 2.8e-207 725.7 596 72.3
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 6.3e-207 724.5 596 72.7
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 1.7e-180 636.7 639 66.0
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.5e-136 490.7 612 55.9
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.2e-128 464.5 644 52.5
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 1.1e-94 351.7 644 42.1
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 2.2e-90 337.4 646 42.3
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.8e-89 334.3 651 41.6
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 1.8e-89 334.3 655 41.5
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 9.1e-89 332.0 653 41.2
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 2.0e-88 330.9 630 41.4
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 7.7e-88 328.9 646 41.2
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.9e-86 324.3 649 40.7
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 1.6e-85 321.2 643 40.1
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 1.0e-84 318.5 640 40.3
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 1.2e-83 315.1 647 40.0
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 2.8e-82 310.5 650 40.3
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 2.8e-82 310.5 650 39.2
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 2.8e-82 310.5 637 39.7
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 1.2e-80 305.1 654 39.8
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 2.0e-80 304.3 650 38.9
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 1.3e-79 301.6 648 39.4
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 2.5e-78 297.4 652 39.3
Haze_07258 Corylus avellana HOM05D005518 ORTHO05D001269 3.3e-78 297.0 567 41.8
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 7.3e-78 295.8 651 39.0
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 1.6e-77 294.7 659 38.7
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 2.8e-77 293.9 650 39.1
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 2.8e-77 293.9 638 39.0
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 1.8e-76 291.2 661 38.0
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 4.0e-76 290.0 642 40.7
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 6.8e-76 289.3 634 39.9
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.2e-75 288.5 647 39.7
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 5.8e-75 286.2 644 37.3
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 9.8e-75 285.4 634 39.3
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 2.2e-74 284.3 648 38.3
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 3.7e-74 283.5 651 38.6
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 9.2e-73 278.9 654 36.2
Manes.14G054500 Manihot esculenta HOM05D005518 ORTHO05D001269 6.0e-72 276.2 612 39.5
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 7.8e-72 275.8 654 37.6
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 1.3e-71 275.0 630 38.1
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 3.0e-71 273.9 657 37.9
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 3.9e-71 273.5 639 39.0
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 1.1e-70 271.9 727 36.6
Glyma.04G193600 Glycine max HOM05D005518 ORTHO05D001269 3.3e-70 270.4 615 40.2
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 7.3e-70 269.2 643 39.7
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 1.2e-69 268.5 651 37.0
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.6e-69 268.1 647 37.6
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 1.6e-69 268.1 634 38.8
CsaV3_1G009430 Cucumis sativus L. HOM05D005518 ORTHO05D001269 2.8e-69 267.3 651 36.4
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 4.7e-69 266.5 652 37.6
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 6.2e-69 266.2 649 37.6
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 8.0e-69 265.8 624 39.1
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 1.4e-68 265.0 642 37.7
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 2.3e-68 264.2 666 36.6
Sed0017473 Sechium edule HOM05D005518 ORTHO05D001269 4.0e-68 263.5 644 36.2
ClCG03G003580 Citrullus lanatus HOM05D005518 ORTHO05D001269 6.8e-68 262.7 680 36.2
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 1.5e-67 261.5 656 36.9
Sed0015656 Sechium edule HOM05D005518 ORTHO05D001269 2.0e-67 261.2 647 36.3
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 9.8e-67 258.8 648 38.7
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 2.2e-66 257.7 591 37.7
SGA_v2.0_scaffold37G14614 Striga asiatica HOM05D005518 ORTHO05D001269 1.9e-65 254.6 641 37.1
Migut.D01234 Erythranthe guttata HOM05D005518 ORTHO05D001269 3.2e-65 253.8 634 38.3
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 5.4e-65 253.1 633 38.9
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.7e-63 248.1 671 35.6
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 1.5e-62 245.0 650 37.4
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 3.6e-61 240.4 661 35.7
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 6.2e-61 239.6 646 36.7
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 6.2e-61 239.6 647 36.3
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 1.1e-60 238.8 620 37.3
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 6.8e-60 236.1 637 36.1
TPR.G26139 Trifolium pratense HOM05D005518 ORTHO05D001269 1.5e-59 235.0 648 37.2
MELO3C002344.2 Cucumis melo HOM05D005518 ORTHO05D001269 9.9e-59 232.3 645 34.4
Sc04g0000850 Simmondsia chinensis HOM05D005518 ORTHO05D001269 2.3e-55 221.1 633 35.7
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 3.0e-55 220.7 658 36.8
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 3.9e-55 220.3 637 35.3
SalBow1G4741 Salvia bowleyana HOM05D005518 ORTHO05D001269 5.1e-55 219.9 562 42.9
PGSC0003DMG400015252 Solanum tuberosum HOM05D005518 ORTHO05D001269 1.1e-54 218.8 621 36.4
FAN18G1514 Fragaria x ananassa HOM05D000557 ORTHO05D001269 5.6e-54 216.5 538 38.1
vmacro16655 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 5.6e-54 216.5 624 36.7
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 2.8e-53 214.2 667 37.0
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 1.1e-52 212.2 646 33.7
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 2.4e-52 211.1 669 38.0
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 6.8e-52 209.5 636 39.5
MSTRG.9316 Avicennia marina HOM05D005518 ORTHO05D001269 2.0e-51 208.0 616 35.9
Oeu055998.1 Olea europaea HOM05D005518 ORTHO05D001269 3.4e-51 207.2 623 35.2
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 5.8e-51 206.5 651 34.3
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 6.4e-50 203.0 623 34.3
Nitab4.5_0005327g0060 Nicotiana tabacum HOM05D005518 ORTHO05D001269 8.4e-50 202.6 626 34.0
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 1.1e-49 202.2 665 34.0
MD06G1148700 Malus domestica HOM05D005518 ORTHO05D001269 3.2e-49 200.7 612 35.6
Sopen03g030200 Solanum pennellii HOM05D005518 ORTHO05D001269 3.5e-48 197.2 617 35.0
Nitab4.5_0001664g0120 Nicotiana tabacum HOM05D005518 ORTHO05D001269 1.3e-47 195.3 625 37.1
Solyc03g111030.3 Solanum lycopersicum HOM05D005518 ORTHO05D001269 5.1e-47 193.4 621 35.1
HanXRQChr02g0035181 Helianthus annuus HOM05D005518 ORTHO05D001269 1.1e-46 192.2 625 32.6
EL10As4g23466 Beta vulgaris HOM05D005518 ORTHO05D001269 1.9e-46 191.4 603 33.8
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 3.3e-46 190.7 607 36.9
Lj9A476T55 Lonicera japonica HOM05D005518 ORTHO05D001269 1.3e-45 188.7 579 35.6
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 7.6e-43 179.5 618 32.7
ECA247G0960 Erigeron canadensis HOM05D005518 ORTHO05D001269 1.3e-42 178.7 668 31.0
Lsat_1_v5_gn_1_29580 Lactuca sativa HOM05D005518 ORTHO05D001269 1.3e-42 178.7 622 35.4
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 3.8e-42 177.2 671 34.7
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 1.4e-41 175.3 621 33.0
HanXRQChr04g0100301 Helianthus annuus HOM05D005518 ORTHO05D001269 7.8e-40 169.5 716 30.7
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 3.9e-39 167.2 355 36.9
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 7.3e-38 162.9 596 32.4
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 8.1e-37 159.5 257 42.8
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 1.4e-36 158.7 649 30.2
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 4.0e-36 157.1 654 30.0
Duzib068G1391 Durio zibethinus HOM05D005518 ORTHO05D001269 1.0e-31 142.5 315 39.0
Migut.I00490 Erythranthe guttata HOM05D005518 ORTHO05D001269 2.3e-31 141.4 543 32.2
MD14G1162500 Malus domestica HOM05D005518 ORTHO05D001269 6.2e-29 133.3 343 38.5
vmacro16713 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 8.1e-29 132.9 258 39.1
Ca_25438_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 2.5e-25 121.3 198 42.9
Sc22g0004150 Simmondsia chinensis HOM05D005518 ORTHO05D001269 3.0e-23 114.4 321 33.6
MD14G1162600 Malus domestica HOM05D005518 ORTHO05D001269 8.2e-21 106.3 202 37.1
Actinidia25603 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.1e-17 95.9 468 31.0
CSS0031701 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 6.1e-16 90.1 403 31.5
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 1.8e-15 88.6 468 27.8
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 6.7e-15 86.7 207 33.3
Sc22g0004140 Simmondsia chinensis HOM05D005518 ORTHO05D001269 4.8e-13 80.5 103 54.4
Actinidia08857 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.1e-12 79.3 304 34.9
HPP92_027039 Vanilla planifolia HOM05D005518 ORTHO05D001269 2.4e-12 78.2 324 32.1
Ca_16087_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 4.1e-12 77.4 166 47.6
arahy.Tifrunner.gnm1.ann1.QJ9WGP Arachis hypogaea HOM05D001134 ORTHO05D001035 5.3e-12 77.0 104 47.1
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 5.0e-10 70.5 427 28.3
unitig_22.g5764 Utricularia gibba HOM05D005518 ORTHO05D001269 1.4e-09 68.9 624 25.3
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 2.5e-09 68.2 433 28.2
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 4.2e-09 67.4 433 28.2
Cfa018874 Carpinus fangiana HOM05D005518 ORTHO05D001269 1.6e-08 65.5 90 51.1
vmacro16712 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 1.6e-08 65.5 307 31.6
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 7.9e-08 63.2 257 29.6
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 6.7e-07 60.1 250 26.4
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 2.5e-06 58.2 257 28.4
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 3.3e-06 57.8 100 43.0
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 5.7e-06 57.0 252 29.0
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 7.4e-06 56.6 148 37.2
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 7.4e-06 56.6 264 28.8


User provided reference genes

Program Settings