Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.9e-128 462.6 254 100.0
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.5e-88 330.1 216 84.7
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 5.2e-81 305.1 256 68.0
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.4e-70 270.4 170 82.9
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 5.0e-52 208.8 238 51.3
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.1e-43 181.0 184 57.6
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 4.3e-43 179.1 250 50.0
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 4.7e-42 175.6 259 43.6
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 1.4e-41 174.1 252 45.2
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 1.6e-37 160.6 258 45.0
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 1.6e-37 160.6 258 45.0
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 1.7e-36 157.1 135 58.5
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 2.3e-36 156.8 257 44.7
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 3.9e-36 156.0 257 48.2
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.8e-31 139.4 174 50.0
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 2.1e-29 133.7 255 38.8
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 6.6e-28 128.6 194 42.3
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 8.6e-28 128.3 155 50.3
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 1.9e-27 127.1 194 41.8
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 3.3e-27 126.3 155 49.7
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 4.3e-27 125.9 180 42.2
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 4.3e-27 125.9 180 42.2
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 5.6e-27 125.6 194 43.3
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 9.6e-27 124.8 202 43.1
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 1.2e-26 124.4 155 49.0
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.6e-26 122.9 117 56.4
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-25 121.3 121 52.9
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.9e-25 118.2 122 51.6
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.5e-24 117.5 178 42.1
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 2.0e-24 117.1 254 37.0
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 2.0e-24 117.1 254 37.0
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 7.6e-24 115.2 254 36.6
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 9.9e-24 114.8 134 46.3
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 4.9e-23 112.5 134 46.3
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 4.9e-23 112.5 180 41.7
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 1.4e-22 110.9 204 38.7
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 1.9e-22 110.5 116 50.9
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.4e-22 110.2 116 50.0
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 2.4e-22 110.2 115 49.6
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.4e-22 109.0 120 50.8
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 5.4e-22 109.0 118 51.7
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 7.1e-22 108.6 143 42.7
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 7.1e-22 108.6 143 42.7
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 9.3e-22 108.2 116 45.7
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.2e-21 107.8 116 45.7
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 1.6e-21 107.5 148 38.5
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.1e-21 107.1 177 41.8
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.1e-21 107.1 170 42.9
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 2.1e-21 107.1 115 47.8
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 2.7e-21 106.7 151 45.0
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 2.7e-21 106.7 146 41.8
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 2.7e-21 106.7 123 47.2
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.6e-21 105.9 190 37.9
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.6e-21 105.9 179 38.0
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.6e-21 105.9 191 40.3
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.3e-20 103.6 116 50.9
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.1e-20 102.4 120 49.2
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 8.7e-20 101.7 148 39.9
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 8.7e-20 101.7 115 46.1
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-19 100.9 182 39.6
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-19 100.9 111 47.7
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.9e-19 100.5 116 45.7
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.9e-19 100.5 118 44.9
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 1.9e-19 100.5 116 45.7
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.9e-19 100.5 194 37.6
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 2.5e-19 100.1 139 41.0
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 2.5e-19 100.1 108 47.2
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 3.3e-19 99.8 127 44.1
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.3e-19 99.4 104 51.0
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.6e-19 98.2 179 39.1
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 9.6e-19 98.2 152 43.4
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 9.6e-19 98.2 152 43.4
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.6e-19 98.2 118 44.1
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.3e-18 97.8 113 46.0
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 1.6e-18 97.4 151 42.4
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 1.6e-18 97.4 151 42.4
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.6e-18 97.4 116 43.1
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 1.6e-18 97.4 116 44.8
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 1.6e-18 97.4 116 44.8
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 1.6e-18 97.4 115 44.3
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 1.6e-18 97.4 107 49.5
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.1e-18 97.1 182 39.0
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 2.1e-18 97.1 116 42.2
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.1e-18 97.1 115 45.2
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 2.1e-18 97.1 109 47.7
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.8e-18 96.7 86 61.6
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 3.6e-18 96.3 112 45.5
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 4.8e-18 95.9 109 44.0
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 4.8e-18 95.9 116 43.1
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 6.2e-18 95.5 116 42.2
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 8.1e-18 95.1 116 44.0
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-17 94.7 155 42.6
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 1.1e-17 94.7 154 42.2
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 1.1e-17 94.7 154 42.2
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 1.1e-17 94.7 152 40.1
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 1.1e-17 94.7 115 46.1
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 1.1e-17 94.7 116 40.5
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 1.4e-17 94.4 152 40.8
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.4e-17 94.4 124 41.1
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 1.4e-17 94.4 115 44.3
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 1.8e-17 94.0 150 40.7
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 1.8e-17 94.0 150 40.7
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 1.8e-17 94.0 194 35.1
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 2.4e-17 93.6 155 41.3
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 2.4e-17 93.6 113 44.2
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 3.1e-17 93.2 167 37.1
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 3.1e-17 93.2 194 34.5
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 5.3e-17 92.4 169 38.5
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 5.3e-17 92.4 169 38.5
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 6.9e-17 92.0 171 38.0
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 6.9e-17 92.0 122 41.0
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.0e-17 91.7 155 41.3
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 9.0e-17 91.7 110 45.5
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 2.0e-16 90.5 143 41.3
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 2.0e-16 90.5 115 42.6
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 3.4e-16 89.7 112 40.2
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 4.5e-16 89.4 117 39.3
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 4.5e-16 89.4 173 37.6
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 4.5e-16 89.4 118 41.5
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 4.5e-16 89.4 120 40.8
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 7.6e-16 88.6 174 37.9
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 7.6e-16 88.6 111 40.5
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 9.9e-16 88.2 113 41.6
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 9.9e-16 88.2 118 41.5
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 1.3e-15 87.8 110 41.8
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.3e-15 87.8 179 33.0
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.3e-15 87.8 121 39.7
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 1.3e-15 87.8 112 42.9
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.7e-15 87.4 121 39.7
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.2e-15 87.0 117 41.0
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.2e-15 87.0 179 32.4
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 2.2e-15 87.0 179 32.4
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-15 86.7 125 44.8
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 2.9e-15 86.7 110 44.5
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 3.8e-15 86.3 112 39.3
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 4.9e-15 85.9 118 40.7
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 8.4e-15 85.1 111 45.0
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 8.4e-15 85.1 110 43.6
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 8.4e-15 85.1 110 43.6
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 8.4e-15 85.1 120 38.3
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 8.4e-15 85.1 134 38.1
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 1.1e-14 84.7 110 43.6
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.4e-14 84.3 118 41.5
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.4e-14 83.6 131 37.4
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 3.2e-14 83.2 110 42.7
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 4.2e-14 82.8 111 41.4
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 4.2e-14 82.8 181 34.8
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 4.2e-14 82.8 122 39.3
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 5.4e-14 82.4 109 41.3
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 7.1e-14 82.0 148 43.9
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 2.1e-13 80.5 111 39.6
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 4.6e-13 79.3 105 41.9
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 7.9e-13 78.6 109 38.5
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 1.8e-12 77.4 111 36.9
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 3.0e-12 76.6 139 38.8
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 3.9e-12 76.3 115 36.5
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 5.1e-12 75.9 109 35.8
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 6.7e-12 75.5 109 39.4
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 8.7e-12 75.1 109 42.2
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 1.5e-11 74.3 88 44.3
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.9e-11 73.9 112 37.5
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 3.3e-11 73.2 111 37.8
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 4.3e-11 72.8 112 40.2
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.3e-10 71.2 76 47.4
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 1.3e-10 71.2 117 37.6
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 1.6e-10 70.9 107 37.4
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.6e-10 70.9 178 33.1
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 8.1e-10 68.6 104 37.5
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 1.1e-09 68.2 184 31.5
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 3.1e-09 66.6 106 39.6
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 5.3e-09 65.9 156 28.2
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 5.3e-09 65.9 123 33.3
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.6e-08 63.5 113 37.2
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 5.8e-08 62.4 63 47.6
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 7.6e-08 62.0 79 43.0
PSO782G1409 Papaver somniferum HOM05D002733 ORTHO05D003856 9.9e-08 61.6 107 35.5
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 1.7e-07 60.8 134 35.1
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.1e-06 58.2 63 46.0
Aa31LG8G17180 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-06 57.8 58 53.4
ATR0594G191 Amborella trichopoda HOM05D020218 ORTHO05D013427 1.4e-06 57.8 117 31.6
BcaC01g00056 Brassica carinata HOM05D010480 ORTHO05D003856 1.9e-06 57.4 114 38.6
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.9e-06 57.4 161 31.7
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 1.9e-06 57.4 114 33.3
ClCG08G014520 Citrullus lanatus HOM05D000001 ORTHO05D009054 4.2e-06 56.2 120 31.7


User provided reference genes

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