Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 0.0e+00 1239.2 660 100.0
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.3e-293 1012.7 692 79.2
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 3.6e-283 978.0 692 79.2
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 5.9e-262 907.5 695 71.8
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.0e-258 896.7 689 73.6
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.4e-247 859.8 688 71.5
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 4.7e-235 818.1 701 67.9
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 2.3e-234 815.8 701 67.8
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 7.5e-233 810.8 704 67.6
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 3.2e-231 805.4 696 67.5
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 7.4e-188 661.4 687 54.0
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 3.0e-181 639.4 702 54.8
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.8e-176 622.5 518 68.7
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.7e-144 517.3 492 61.2
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 3.3e-135 486.5 633 45.5
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.0e-133 479.9 462 60.0
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.5e-132 477.6 641 44.6
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 5.7e-132 475.7 636 44.0
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 5.7e-132 475.7 634 44.0
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.7e-131 474.2 637 44.3
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 6.3e-131 472.2 637 45.5
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.8e-130 470.7 639 45.4
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.8e-130 470.7 640 45.8
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 4.1e-130 469.5 638 43.3
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 5.4e-130 469.2 677 43.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 2.0e-129 467.2 643 46.3
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.9e-127 460.7 709 42.0
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 7.3e-127 458.8 694 45.4
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.9e-123 446.8 698 41.7
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 3.7e-123 446.4 613 44.4
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.4e-122 444.5 645 43.9
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 2.4e-122 443.7 645 43.9
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.2e-121 441.4 645 43.9
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.9e-119 434.1 618 44.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.3e-119 433.0 645 43.6
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.8e-117 427.6 660 41.7
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 5.2e-117 426.0 627 42.3
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 2.9e-115 420.2 604 42.1
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.4e-114 417.9 586 43.2
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.9e-114 417.5 641 41.0
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 5.4e-114 416.0 710 39.7
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 5.4e-114 416.0 638 42.6
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 7.0e-114 415.6 725 41.8
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 9.2e-114 415.2 710 39.7
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.7e-113 413.7 637 42.2
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 5.0e-112 409.5 631 42.0
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.5e-111 407.1 695 39.3
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 7.3e-111 405.6 686 38.5
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.6e-110 404.4 685 39.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 4.0e-109 399.8 642 41.7
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 6.8e-109 399.1 714 41.0
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 7.5e-108 395.6 634 40.5
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 2.9e-107 393.7 702 38.5
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.7e-107 393.3 697 40.0
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 4.9e-107 392.9 710 38.7
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 6.4e-107 392.5 608 41.4
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.9e-106 391.0 592 42.6
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 3.2e-106 390.2 691 38.6
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.5e-105 386.7 718 37.5
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.3e-104 384.8 642 39.7
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 3.0e-104 383.6 600 42.0
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 3.9e-104 383.3 653 38.9
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.9e-103 380.9 681 38.5
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 2.5e-103 380.6 630 40.5
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 3.3e-103 380.2 704 37.5
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.3e-103 380.2 619 40.9
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 4.3e-103 379.8 572 41.8
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.2e-102 378.3 630 40.8
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.1e-101 375.2 628 40.0
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.0e-101 373.2 658 38.3
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 5.2e-101 372.9 631 40.3
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.9e-101 372.1 658 38.4
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.4e-100 370.2 675 39.0
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 4.4e-100 369.8 672 38.8
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.4e-100 369.8 589 41.8
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 5.8e-100 369.4 578 39.6
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 1.7e-99 367.9 605 39.5
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.8e-99 366.7 244 93.0
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 8.7e-96 355.5 590 39.7
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.5e-95 354.8 583 39.3
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 2.5e-95 354.0 601 38.6
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 3.3e-95 353.6 544 40.6
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.2e-94 351.7 599 39.6
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 8.1e-94 349.0 696 39.7
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 1.8e-93 347.8 599 39.6
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.4e-91 339.0 693 36.4
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 3.2e-90 337.0 642 37.2
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 3.0e-88 330.5 495 42.2
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 3.0e-88 330.5 587 38.5
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 5.1e-88 329.7 630 37.0
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 4.3e-87 326.6 614 35.5
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 5.6e-87 326.2 687 35.2
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 8.1e-86 322.4 355 49.6
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.4e-85 321.6 606 36.0
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.5e-84 318.2 628 36.0
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 5.8e-84 316.2 629 35.8
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 2.1e-78 297.7 581 36.0
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 4.8e-78 296.6 586 35.3
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.1e-77 295.4 579 33.3
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 6.4e-75 286.2 487 39.2
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 2.1e-73 281.2 603 34.3
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.9e-72 276.9 416 43.3
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.5e-71 275.0 432 41.2
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.5e-71 274.2 374 43.6
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.6e-70 271.6 224 62.9
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.8e-70 270.8 453 39.7
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.4e-69 268.5 418 39.7
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 3.1e-69 267.3 494 38.3
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.5e-68 265.0 454 37.4
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 4.2e-66 256.9 577 35.5
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 7.1e-66 256.1 589 32.8
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.3e-62 245.4 637 30.9
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 3.1e-61 240.7 699 29.5
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 9.0e-61 239.2 556 33.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.7e-59 235.0 444 36.5
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.1e-58 232.3 312 49.0
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.5e-58 231.1 297 50.5
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 3.0e-56 224.2 613 29.9
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 3.9e-56 223.8 715 27.8
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 3.9e-56 223.8 655 29.9
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 5.5e-50 203.4 660 28.8
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 5.5e-50 203.4 660 28.8
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.2e-49 202.2 296 47.6
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.0e-48 199.1 480 31.5
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.0e-48 199.1 427 34.2
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.0e-45 186.4 602 30.6
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.0e-36 158.3 328 36.0
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 2.2e-35 154.8 227 45.8
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 7.2e-34 149.8 192 49.0
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.3e-30 139.0 394 30.2
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.3e-30 139.0 168 51.2
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.4e-29 134.8 242 38.0
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 3.1e-29 134.4 395 31.4
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.1e-29 134.0 388 29.9
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 7.0e-29 133.3 169 49.7
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 9.1e-29 132.9 213 38.5
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.2e-27 128.3 331 30.5
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 6.5e-27 126.7 358 30.2
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 3.6e-25 120.9 115 59.1
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.1e-21 109.4 202 34.7
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.4e-21 108.2 200 35.5
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.1e-21 107.8 141 43.3
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.4e-21 107.1 138 44.2
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.8e-19 100.9 103 53.4
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.5e-18 99.0 126 41.3
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.5e-18 99.0 381 26.0
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.8e-16 92.0 95 53.7
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.2e-15 89.4 106 46.2
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.0e-15 88.6 100 50.0
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.3e-14 85.9 67 58.2
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 3.7e-14 84.3 215 33.0
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 8.3e-14 83.2 103 46.6
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.1e-13 80.9 81 50.6
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.3e-11 75.9 49 67.3
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.6e-09 68.9 70 58.6
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.8e-09 68.2 139 36.0
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.4e-07 61.2 101 39.6
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 4.4e-07 60.8 142 31.7
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 5.8e-07 60.5 580 22.4
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 7.5e-07 60.1 103 35.0
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 6.4e-06 57.0 107 32.7


User provided reference genes

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