Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G23230 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 9.7e-86 320.1 159 100.0
AL7G10400 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 4.2e-81 304.7 159 95.6
AL2G41610 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.0e-79 300.1 159 95.0
AL5G17660 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 2.3e-79 298.9 159 95.0
AL3G42160 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 8.8e-79 297.0 156 94.2
AL1G32470 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 7.4e-78 293.9 150 97.3
AT1G19740 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 7.4e-78 293.9 150 97.3
Carub.0001s1929 Capsella rubella HOM05D004346 ORTHO05D005153 7.4e-78 293.9 150 97.3
Sp1g17580 Schrenkiella parvula HOM05D004346 ORTHO05D005153 7.4e-78 293.9 150 97.3
Thhalv10008437m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 4.8e-77 291.2 150 96.0
CARHR020270 Cardamine hirsuta HOM05D004346 ORTHO05D005153 6.3e-77 290.8 150 95.3
A06p15850 Brassica napus HOM05D004346 ORTHO05D005153 2.0e-75 285.8 150 93.3
BraA06t24697Z Brassica rapa HOM05D004346 ORTHO05D005153 2.0e-75 285.8 150 93.3
BolC5t30525H Brassica oleracea HOM05D004346 ORTHO05D005153 6.5e-74 280.8 151 92.7
C05p18170 Brassica napus HOM05D004346 ORTHO05D005153 1.9e-73 279.3 151 92.1
Aa31LG4G5700 Aethionema arabicum HOM05D004346 ORTHO05D005153 3.6e-72 275.0 150 90.0
THA.LOC104813810 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 2.3e-71 272.3 150 88.0
CARHR068870 Cardamine hirsuta HOM05D004346 ORTHO05D005153 2.0e-70 269.2 150 87.3
AT1G75460 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 4.4e-70 268.1 150 86.7
A02p19950 Brassica napus HOM05D004346 ORTHO05D005153 7.5e-70 267.3 150 87.3
BraA02t07032Z Brassica rapa HOM05D004346 ORTHO05D005153 7.5e-70 267.3 150 87.3
BcaB05g24908 Brassica carinata HOM05D004346 ORTHO05D005153 9.8e-70 266.9 150 87.3
C02p32610 Brassica napus HOM05D004346 ORTHO05D005153 9.8e-70 266.9 150 86.7
Carub.0002s2234 Capsella rubella HOM05D004346 ORTHO05D005153 2.2e-69 265.8 150 85.3
AL2G35430 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 2.8e-69 265.4 150 86.0
BolC2t09292H Brassica oleracea HOM05D004346 ORTHO05D005153 2.8e-69 265.4 150 86.7
Sp5g30610 Schrenkiella parvula HOM05D004346 ORTHO05D005153 2.8e-69 265.4 150 86.7
Thhalv10019638m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 4.8e-69 264.6 150 86.0
BcaC03g15576 Brassica carinata HOM05D004346 ORTHO05D005153 6.3e-69 264.2 150 86.0
THA.LOC104809066 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 1.4e-68 263.1 150 86.0
BcaB07g31988 Brassica carinata HOM05D004346 ORTHO05D005153 5.4e-68 261.2 145 90.3
TWI56G1281 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 7.7e-67 257.3 150 84.0
Thecc.08G035100 Theobroma cacao HOM05D004346 ORTHO05D005153 3.2e-65 251.9 150 81.3
COL.COLO4_26227 Corchorus olitorius HOM05D004346 ORTHO05D005153 4.2e-65 251.5 150 82.0
Duzib093G0381 Durio zibethinus HOM05D004346 ORTHO05D005153 4.2e-65 251.5 150 82.0
Duzib116G0866 Durio zibethinus HOM05D004346 ORTHO05D005153 5.5e-65 251.1 150 81.3
CiPaw.07G155800 Carya illinoinensis HOM05D004346 ORTHO05D005153 9.4e-65 250.4 152 82.2
Manes.18G022200 Manihot esculenta HOM05D004346 ORTHO05D005153 1.2e-64 250.0 150 80.7
Potri.002G029900 Populus trichocarpa HOM05D004346 ORTHO05D005153 1.2e-64 250.0 149 81.2
Atru.chr13.385 Acer truncatum HOM05D004346 ORTHO05D005153 1.6e-64 249.6 150 81.3
Cpa.g.sc698.2 Carica papaya HOM05D004346 ORTHO05D005153 1.6e-64 249.6 150 82.0
AL7G11380 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 2.1e-64 249.2 159 81.8
ClCG05G018660 Citrullus lanatus HOM05D004346 ORTHO05D005153 4.7e-64 248.1 152 81.6
MELO3C003788.2 Cucumis melo HOM05D004346 ORTHO05D005153 4.7e-64 248.1 152 81.6
Ciclev10002101m.g Citrus clementina HOM05D004346 ORTHO05D005153 8.0e-64 247.3 150 81.3
Sabra02G0023800 Salix brachista HOM05D004346 ORTHO05D005153 8.0e-64 247.3 149 79.9
TWI36G0841 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 1.0e-63 246.9 150 79.3
QL02p010362 Quercus lobata HOM05D004346 ORTHO05D005153 1.8e-63 246.1 152 80.9
RcHm_v2.0_Chr6g0301881 Rosa chinensis HOM05D004346 ORTHO05D005153 1.8e-63 246.1 152 81.6
CANSAT25G3810 Cannabis sativa HOM05D004346 ORTHO05D005153 3.0e-63 245.4 151 80.8
Cfa013888 Carpinus fangiana HOM05D004346 ORTHO05D005153 3.0e-63 245.4 152 80.9
Haze_22565 Corylus avellana HOM05D004346 ORTHO05D005153 3.0e-63 245.4 152 80.9
FAN15G2637 Fragaria x ananassa HOM05D004346 ORTHO05D005153 4.0e-63 245.0 152 80.9
Thhalv10027193m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 5.2e-63 244.6 135 85.9
Nn1g05970 Nelumbo nucifera HOM05D004346 ORTHO05D005153 5.2e-63 244.6 151 79.5
CsaV3_3G045520 Cucumis sativus L. HOM05D004346 ORTHO05D005153 6.8e-63 244.2 152 80.3
FAN27G0767 Fragaria x ananassa HOM05D004346 ORTHO05D005153 8.8e-63 243.8 152 80.9
Prupe.1G372600 Prunus persica HOM05D004346 ORTHO05D005153 8.8e-63 243.8 152 80.3
Cc10_g02310 Coffea canephora HOM05D004346 ORTHO05D005153 1.2e-62 243.4 151 79.5
MBI01_g12679_MAGBIO Magnolia biondii HOM05D004346 ORTHO05D005153 1.2e-62 243.4 149 79.2
Potri.005G232800 Populus trichocarpa HOM05D004346 ORTHO05D005153 1.2e-62 243.4 149 79.9
Sed0026661 Sechium edule HOM05D004346 ORTHO05D009095 1.5e-62 243.0 152 80.3
MD08G1023400 Malus domestica HOM05D004346 ORTHO05D005153 2.0e-62 242.7 152 79.6
CSS0003618 Camellia sinensis var. sinensis HOM05D004346 ORTHO05D005153 3.4e-62 241.9 151 79.5
FvH4_2g39180 Fragaria vesca HOM05D004346 ORTHO05D005153 3.4e-62 241.9 152 80.3
FAN20G0669 Fragaria x ananassa HOM05D004346 ORTHO05D005153 3.4e-62 241.9 152 79.6
Nn5g29149 Nelumbo nucifera HOM05D004346 ORTHO05D005153 3.4e-62 241.9 151 78.8
Dinv39468 Davidia involucrata HOM05D004346 ORTHO05D005153 4.4e-62 241.5 151 79.5
Duzib041G0460 Durio zibethinus HOM05D004346 ORTHO05D005153 4.4e-62 241.5 150 79.3
Gohir.A05G189500 Gossypium hirsutum HOM05D004346 ORTHO05D005153 4.4e-62 241.5 149 77.9
Gohir.D05G192800 Gossypium hirsutum HOM05D004346 ORTHO05D005153 4.4e-62 241.5 149 77.9
Gorai.009G198000 Gossypium raimondii HOM05D004346 ORTHO05D005153 4.4e-62 241.5 149 77.9
MSTRG.24272 Avicennia marina HOM05D004346 ORTHO05D005153 9.8e-62 240.4 150 79.3
Dinv31796 Davidia involucrata HOM05D004346 ORTHO05D005153 1.3e-61 240.0 151 78.1
Thhalv10029286m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 1.7e-61 239.6 135 85.2
DCAR_009955 Daucus carota HOM05D004346 ORTHO05D005153 2.2e-61 239.2 150 78.0
Migut.N03118 Erythranthe guttata HOM05D004346 ORTHO05D005153 2.8e-61 238.8 151 79.5
Eucgr.F01853 Eucalyptus grandis HOM05D004346 ORTHO05D005153 2.8e-61 238.8 151 77.5
MD15G1020800 Malus domestica HOM05D004346 ORTHO05D005153 2.8e-61 238.8 152 78.3
Sed0026579 Sechium edule HOM05D004346 ORTHO05D005153 4.9e-61 238.0 152 79.6
Aqoxy6G01229 Aquilegia oxysepala HOM05D004346 ORTHO05D005153 6.3e-61 237.7 151 75.5
Sopen04g034450 Solanum pennellii HOM05D004346 ORTHO05D005153 6.3e-61 237.7 151 77.5
PGSC0003DMG400003704 Solanum tuberosum HOM05D004346 ORTHO05D005153 6.3e-61 237.7 151 77.5
unitig_21.g20157 Utricularia gibba HOM05D004346 ORTHO05D005153 8.3e-61 237.3 150 77.3
Eucgr.F01605 Eucalyptus grandis HOM05D004346 ORTHO05D005153 1.1e-60 236.9 152 77.6
PSO541G5233 Papaver somniferum HOM05D004346 ORTHO05D005153 1.1e-60 236.9 152 75.7
PSO675G8115 Papaver somniferum HOM05D004346 ORTHO05D005153 1.1e-60 236.9 152 75.7
TAR068G0006 Trochodendron aralioides HOM05D004346 ORTHO05D005153 1.1e-60 236.9 152 77.6
Lsat_1_v5_gn_5_25761 Lactuca sativa HOM05D004346 ORTHO05D005153 1.4e-60 236.5 150 78.0
CiPaw.08G061400 Carya illinoinensis HOM05D004346 ORTHO05D005153 1.8e-60 236.1 152 78.3
Oeu030408.1 Olea europaea HOM05D004346 ORTHO05D005153 1.8e-60 236.1 152 76.3
Oeu030608.1 Olea europaea HOM05D004346 ORTHO05D005153 1.8e-60 236.1 151 76.2
SalBow8G0366 Salvia bowleyana HOM05D004346 ORTHO05D005153 1.8e-60 236.1 151 78.1
SalBow8G2486 Salvia bowleyana HOM05D004346 ORTHO05D005153 1.8e-60 236.1 151 78.1
Lj4C32T10 Lonicera japonica HOM05D004346 ORTHO05D005153 3.1e-60 235.3 151 76.8
Actinidia22506 Actinidia chinensis HOM05D004346 ORTHO05D005153 4.1e-60 235.0 151 76.8
CAN.G851.33 Capsicum annuum HOM05D004346 ORTHO05D005153 5.4e-60 234.6 151 76.2
Gorai.002G126100 Gossypium raimondii HOM05D004346 ORTHO05D005153 5.4e-60 234.6 150 76.0
Lalb_Chr23g0266421 Lupinus albus HOM05D004346 ORTHO05D005153 5.4e-60 234.6 160 75.0
Lj1g0013800 Lotus japonicus HOM05D004346 ORTHO05D005153 7.0e-60 234.2 152 77.0
Nitab4.5_0002156g0110 Nicotiana tabacum HOM05D004346 ORTHO05D005153 1.2e-59 233.4 151 76.2
TAR376G0822 Trochodendron aralioides HOM05D004346 ORTHO05D005153 1.2e-59 233.4 150 74.7
Gohir.D01G101600 Gossypium hirsutum HOM05D004346 ORTHO05D005153 1.6e-59 233.0 149 75.8
Gohir.A06G006700 Gossypium hirsutum HOM05D004346 ORTHO05D005153 2.0e-59 232.6 151 77.5
Nitab4.5_0001861g0130 Nicotiana tabacum HOM05D004346 ORTHO05D005153 2.0e-59 232.6 150 76.7
VMungo1309G1438 Vigna mungo HOM05D004346 ORTHO05D005153 2.7e-59 232.3 152 77.0
arahy.Tifrunner.gnm1.ann1.FS02K0 Arachis hypogaea HOM05D004346 ORTHO05D005153 3.5e-59 231.9 153 75.8
Gorai.010G007200 Gossypium raimondii HOM05D004346 ORTHO05D005153 3.5e-59 231.9 151 76.8
ATR0680G160 Amborella trichopoda HOM05D004346 ORTHO05D005153 5.9e-59 231.1 151 74.8
Phvul.009G012900 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 5.9e-59 231.1 152 76.3
Glyma.04G028400 Glycine max HOM05D004346 ORTHO05D005153 7.7e-59 230.7 152 75.7
ECA232G0130 Erigeron canadensis HOM05D004346 ORTHO05D005153 1.0e-58 230.3 153 73.9
Gohir.D06G002460 Gossypium hirsutum HOM05D004346 ORTHO05D005153 1.7e-58 229.6 151 76.2
Glyma.06G028500 Glycine max HOM05D004346 ORTHO05D005153 2.3e-58 229.2 152 75.7
SGA_v2.0_scaffold326G48739 Striga asiatica HOM05D004346 ORTHO05D005153 2.3e-58 229.2 151 73.5
TPR.G12390 Trifolium pratense HOM05D004346 ORTHO05D005153 2.9e-58 228.8 152 75.7
Mapoly0123s0028 Marchantia polymorpha HOM05D004346 ORTHO05D005153 3.8e-58 228.4 151 76.8
Ca_02070_v3 Cicer arietinum L. HOM05D004346 ORTHO05D005153 5.0e-58 228.0 152 74.3
Medtr3g112420 Medicago truncatula HOM05D004346 ORTHO05D005153 8.6e-58 227.3 152 73.7
Psat0s471g0440 Pisum sativum HOM05D004346 ORTHO05D005153 1.5e-57 226.5 152 74.3
Phvul.001G010700 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 7.2e-57 224.2 152 73.7
VMungo0647G1706 Vigna mungo HOM05D004346 ORTHO05D005153 1.6e-56 223.0 152 73.0
Ah.10g035530 Amaranthus hybridus HOM05D004346 ORTHO05D005153 2.1e-56 222.6 153 68.6
AUR62034542 Chenopodium quinoa HOM05D004346 ORTHO05D005153 4.7e-56 221.5 154 70.8
Pp3c2_28030 Physcomitrium patens HOM05D004346 ORTHO05D005153 4.7e-56 221.5 151 74.2
Rhsim06G0027900 Rhododendron simsii HOM05D004346 ORTHO05D005153 8.0e-56 220.7 151 72.8
unitig_22.g6787 Utricularia gibba HOM05D004346 ORTHO05D005153 1.4e-55 219.9 154 73.4
Glyma.14G070400 Glycine max HOM05D004346 ORTHO05D005153 1.8e-55 219.5 155 72.3
Sc15g0007210 Simmondsia chinensis HOM05D004346 ORTHO05D005153 8.9e-55 217.2 151 71.5
Os07g0509700 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 2.0e-54 216.1 155 67.1
CBR_g8224 Chara braunii HOM05D004346 ORTHO05D005153 2.6e-54 215.7 151 70.2
Zm00001eb105790 Zea mays HOM05D004346 ORTHO05D005153 7.5e-54 214.2 155 68.4
Zm00001eb322430 Zea mays HOM05D004346 ORTHO05D005153 1.7e-53 213.0 155 68.4
SMO340G0026 Selaginella moellendorffii HOM05D004346 ORTHO05D005153 3.7e-53 211.8 158 68.4
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 8.3e-53 210.7 151 69.5
HPP92_007934 Vanilla planifolia HOM05D004346 ORTHO05D005153 1.4e-52 209.9 160 68.1
SEGI_26379 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 1.8e-52 209.5 151 70.9
CDE03G0026 Ceratophyllum demersum HOM05D004346 ORTHO05D005153 2.7e-51 205.7 127 76.4
Nn5g30640 Nelumbo nucifera HOM05D004346 ORTHO05D005153 5.6e-49 198.0 126 73.8
Zm00001eb380450 Zea mays HOM05D004346 ORTHO05D005153 2.6e-46 189.1 139 66.2
CBR_g51048 Chara braunii HOM05D004346 ORTHO05D005153 1.3e-45 186.8 161 59.6
FAN03G3294 Fragaria x ananassa HOM05D004346 ORTHO05D005153 3.0e-42 175.6 116 75.9
FAN09G3639 Fragaria x ananassa HOM05D004346 ORTHO05D005153 3.9e-42 175.3 116 75.9
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 3.9e-42 175.3 116 75.9
LjContig00412g0021689 Lotus japonicus HOM05D004346 ORTHO05D005153 5.6e-41 171.4 119 72.3
Lj3g0013855 Lotus japonicus HOM05D004346 ORTHO05D005153 1.2e-40 170.2 119 72.3
FAN21G1121 Fragaria x ananassa HOM05D004346 ORTHO05D005153 8.9e-39 164.1 116 74.1
Actinidia15370 Actinidia chinensis HOM05D004346 ORTHO05D005153 2.9e-37 159.1 143 62.2
Peaxi162Scf00189g00121 Petunia axillaris HOM05D004346 ORTHO05D005153 4.9e-37 158.3 102 77.5
FAN17G2329 Fragaria x ananassa HOM05D004346 ORTHO05D005153 2.4e-36 156.0 102 76.5
AagrBONN_evm.TU.Sc2ySwM_117.454 Anthoceros agrestis HOM05D004346 ORTHO05D005153 2.0e-30 136.3 98 65.3
VMungo1383G2745 Vigna mungo HOM05D003359 ORTHO05D005153 3.0e-26 122.5 84 70.2
FAN07G0972 Fragaria x ananassa HOM05D002863 ORTHO05D005691 1.8e-23 113.2 75 77.3
Solyc04g080870.1 Solanum lycopersicum HOM05D004346 ORTHO05D005153 3.2e-20 102.4 56 85.7
Os03g0409100 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 3.5e-19 99.0 162 41.4
Zm00001eb019650 Zea mays HOM05D004346 ORTHO05D005153 1.9e-17 93.2 153 39.9
FAN13G0889 Fragaria x ananassa HOM05D004346 ORTHO05D005153 6.9e-15 84.7 50 80.0
Cre02.g141550 Chlamydomonas reinhardtii HOM05D004346 ORTHO05D005153 3.2e-12 75.9 147 36.1
Gohir.A01G113800 Gossypium hirsutum HOM05D004346 ORTHO05D005153 3.0e-10 69.3 52 67.3
CiPaw.11G047400 Carya illinoinensis HOM05D000041 ORTHO05D006140 2.5e-09 66.2 160 29.4
PRCOL_00005671 Prasinoderma coloniale HOM05D004346 ORTHO05D005153 4.3e-09 65.5 146 30.1
Medtr3g037230 Medicago truncatula HOM05D000041 ORTHO05D006140 4.8e-08 62.0 160 31.2
Pp3c15_14620 Physcomitrium patens HOM05D000041 ORTHO05D006140 4.8e-08 62.0 168 28.6


User provided reference genes

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