Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 4.6e-103 377.9 185 100.0
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.1e-93 346.7 186 91.9
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 9.6e-69 263.8 183 77.6
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 4.2e-64 248.4 197 72.6
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.0e-62 243.8 192 73.4
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 7.4e-53 211.1 192 66.7
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 7.4e-53 211.1 192 66.7
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 7.4e-53 211.1 192 66.7
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 9.6e-53 210.7 196 63.8
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 2.1e-52 209.5 192 65.6
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 6.3e-52 208.0 192 65.6
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 1.5e-50 203.4 199 62.3
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 4.2e-48 195.3 219 57.1
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 4.2e-48 195.3 219 57.1
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 9.3e-48 194.1 223 57.4
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 2.3e-46 189.5 222 55.4
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 7.4e-45 184.5 191 60.2
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 8.2e-44 181.0 211 55.9
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 4.1e-43 178.7 206 54.9
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.5e-42 176.8 204 53.9
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 6.5e-41 171.4 200 52.0
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.9e-40 169.9 203 53.7
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 3.2e-40 169.1 202 53.0
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.2e-39 167.2 208 53.8
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 1.6e-39 166.8 201 55.2
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 6.1e-39 164.9 203 50.2
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.4e-38 163.7 202 52.0
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.3e-38 162.9 204 56.4
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 3.9e-38 162.2 202 54.0
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 8.8e-38 161.0 202 53.0
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.5e-37 160.2 198 51.5
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.0e-37 159.8 208 50.0
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 3.3e-37 159.1 200 52.0
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 3.3e-37 159.1 201 51.2
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 5.7e-37 158.3 200 52.0
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 5.7e-37 158.3 200 52.0
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 5.7e-37 158.3 203 48.3
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.7e-36 156.8 198 49.0
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 4.8e-36 155.2 193 49.7
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 8.2e-36 154.5 208 49.0
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 1.1e-35 154.1 201 53.2
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 1.1e-35 154.1 201 54.7
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.4e-35 153.7 202 53.0
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 1.8e-35 153.3 205 53.2
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 5.3e-35 151.8 203 50.2
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 6.9e-35 151.4 202 54.0
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 6.9e-35 151.4 201 51.7
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 9.1e-35 151.0 202 52.5
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 9.1e-35 151.0 194 49.5
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.5e-34 150.2 210 48.6
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.6e-34 149.4 203 47.3
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 2.6e-34 149.4 202 50.5
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 4.5e-34 148.7 201 49.8
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 4.5e-34 148.7 204 51.0
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.0e-33 147.5 202 47.5
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 2.2e-33 146.4 210 49.0
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 2.2e-33 146.4 200 49.5
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.2e-33 146.4 200 49.5
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.2e-33 146.4 200 49.5
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 2.2e-33 146.4 198 47.5
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.9e-33 146.0 192 49.5
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 2.9e-33 146.0 192 49.5
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 5.0e-33 145.2 194 48.5
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 5.0e-33 145.2 204 48.5
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 1.1e-32 144.1 200 48.5
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.4e-32 143.7 200 49.0
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.5e-32 142.9 192 48.4
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 2.5e-32 142.9 203 50.2
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 3.2e-32 142.5 201 52.2
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 7.2e-32 141.4 206 47.6
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 7.2e-32 141.4 204 45.6
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 9.4e-32 141.0 203 47.8
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.1e-31 139.8 200 47.5
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.7e-31 139.4 200 49.0
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 2.7e-31 139.4 206 48.1
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 4.7e-31 138.7 203 48.8
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.7e-31 138.7 200 47.0
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 4.7e-31 138.7 200 48.5
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 7.9e-31 137.9 200 48.5
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 3.0e-30 136.0 200 47.0
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 3.9e-30 135.6 195 49.7
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 3.9e-30 135.6 195 50.3
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 3.9e-30 135.6 201 48.8
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 2.6e-29 132.9 207 46.9
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 2.6e-29 132.9 207 46.9
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.6e-29 132.9 206 46.6
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 3.3e-29 132.5 194 49.0
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 3.3e-29 132.5 202 43.1
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 5.7e-29 131.7 208 46.2
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 5.7e-29 131.7 208 46.2
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 1.3e-28 130.6 192 47.9
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.3e-28 128.3 200 46.0
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 6.3e-28 128.3 199 46.2
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 8.2e-28 127.9 203 45.3
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.8e-27 126.7 190 45.8
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 2.4e-27 126.3 190 46.3
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 2.4e-27 126.3 202 44.1
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 7.0e-27 124.8 197 44.7
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 7.0e-27 124.8 202 42.6
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 2.6e-26 122.9 189 45.5
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 3.5e-26 122.5 183 49.2
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 4.5e-26 122.1 203 43.8
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 4.5e-26 122.1 200 46.0
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 5.9e-26 121.7 211 45.5
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 2.2e-25 119.8 202 45.0
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 2.9e-25 119.4 215 41.9
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 6.5e-25 118.2 206 42.7
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 5.5e-24 115.2 145 53.1
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 7.2e-24 114.8 198 43.4
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 1.2e-23 114.0 190 41.1
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.1e-23 111.7 200 43.5
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 4.0e-22 109.0 203 41.4
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 5.2e-22 108.6 211 44.1
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 6.7e-22 108.2 202 42.6
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 6.7e-22 108.2 220 38.6
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 6.7e-22 108.2 202 40.6
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 1.5e-21 107.1 205 41.5
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 2.0e-21 106.7 199 39.7
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 2.6e-21 106.3 203 40.4
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.3e-21 105.9 204 40.2
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 3.3e-21 105.9 221 39.4
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 5.7e-21 105.1 199 40.2
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 7.5e-21 104.8 204 43.1
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 9.7e-21 104.4 78 76.9
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 2.8e-20 102.8 208 37.5
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 6.3e-20 101.7 201 39.3
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 5.3e-19 98.6 187 37.4
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 7.0e-19 98.2 201 38.8
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 2.0e-18 96.7 201 37.8
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 5.0e-17 92.0 191 39.3
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 6.5e-17 91.7 207 39.1
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 8.5e-17 91.3 207 38.2
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 4.2e-16 89.0 178 37.1
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.7e-15 85.5 88 55.7
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 4.4e-13 79.0 195 33.8
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 6.3e-12 75.1 67 62.7
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 8.3e-12 74.7 199 33.2
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 9.1e-11 71.2 197 34.0
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 1.3e-09 67.4 94 48.9
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 2.3e-09 66.6 159 40.3
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.9e-09 66.2 36 83.3
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 8.6e-09 64.7 196 32.7
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.1e-08 64.3 142 35.9
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 4.7e-07 58.9 81 50.6


User provided reference genes

Program Settings