Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 2173.7 1095 100.0
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 2015.0 1088 92.7
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1803.1 1051 87.1
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1796.2 1109 82.1
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1793.5 1102 83.2
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1790.8 1109 82.1
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1787.3 1121 81.2
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1783.1 1122 81.5
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1721.8 971 88.2
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1716.8 1067 80.3
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 0.0e+00 1595.5 908 87.8
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1580.1 1103 73.4
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 0.0e+00 1555.8 887 87.6
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1278.1 1078 59.0
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1276.9 1085 59.4
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1232.2 1082 58.5
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1228.0 1076 58.4
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1227.2 1057 57.2
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1225.7 1054 59.3
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1225.7 1049 58.8
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1214.5 1034 57.6
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1204.9 1091 56.8
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1187.9 1065 57.5
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1184.1 1050 57.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1179.5 1029 56.4
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1174.5 1049 56.2
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1172.5 1065 56.9
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1152.9 1054 55.1
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1152.5 1108 53.4
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1150.2 1039 55.7
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1148.7 1056 55.0
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1145.2 1062 54.8
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1145.2 1062 54.8
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1142.9 1051 54.4
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1141.7 1062 54.2
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1132.9 1079 54.3
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1132.9 1065 54.7
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1124.4 1108 52.8
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1124.0 1053 55.1
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1124.0 1087 53.7
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1117.4 1100 52.2
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1115.9 1046 54.8
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1113.6 1102 53.4
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1107.0 1049 53.7
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1100.9 1042 53.0
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1098.2 1089 53.2
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1095.5 1107 53.2
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1094.3 1077 51.2
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 7.5e-312 1074.7 1125 49.2
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 1.4e-308 1063.1 1115 49.7
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 3.4e-307 1058.5 1030 52.7
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 3.4e-307 1058.5 1089 52.0
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 1.0e-306 1057.0 1049 52.9
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 2.7e-304 1048.9 1115 49.5
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 1.1e-302 1043.5 1053 51.9
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 1.1e-302 1043.5 1020 52.0
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.5e-302 1042.3 1001 53.4
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.9e-297 1026.2 998 53.5
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 5.5e-297 1024.6 1104 48.6
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 9.4e-297 1023.8 1020 50.9
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 2.2e-293 1012.7 1018 50.5
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 2.2e-293 1012.7 919 55.6
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 5.9e-291 1004.6 1015 50.9
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 2.2e-290 1002.7 1097 50.2
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 5.5e-289 998.0 1120 48.4
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 4.7e-288 995.0 1020 50.0
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 4.0e-287 991.9 1062 49.1
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.5e-286 989.9 1061 48.7
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 3.3e-286 988.8 973 50.4
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 3.3e-286 988.8 935 53.0
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 3.1e-284 982.2 993 50.1
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 5.9e-283 978.0 1037 48.9
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 2.3e-279 966.1 855 56.6
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 4.4e-278 961.8 1036 48.6
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 1.0e-271 940.6 1044 47.3
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 2.6e-262 909.4 1083 45.4
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 6.4e-261 904.8 778 56.2
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 7.0e-260 901.4 1036 46.4
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 5.6e-257 891.7 873 53.4
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 8.0e-256 887.9 810 55.6
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 3.7e-253 879.0 888 52.1
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 2.5e-249 866.3 1058 44.8
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 6.6e-242 841.6 1088 41.6
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 2.8e-240 836.3 1048 44.2
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 4.3e-233 812.4 762 54.6
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 4.3e-225 785.8 998 42.6
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.3e-218 763.5 902 45.8
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 7.4e-217 758.4 693 55.6
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 6.9e-215 751.9 672 56.2
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.7e-205 720.7 668 54.9
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 4.9e-205 719.2 1026 39.1
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 1.6e-200 704.1 1056 39.5
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 3.6e-195 686.4 731 49.1
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.1e-191 672.9 549 60.1
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 3.9e-186 656.4 599 54.1
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 8.2e-168 595.5 635 48.0
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.3e-165 588.2 499 58.9
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 2.0e-150 537.7 577 49.0
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 1.6e-118 431.8 367 58.3
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.6e-107 394.0 343 58.3
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 1.6e-94 352.1 379 48.3
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 2.4e-90 338.2 351 48.7
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.4e-84 316.6 1018 26.9
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 6.7e-77 293.5 218 61.9
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 6.7e-69 266.9 226 58.8
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 3.3e-68 264.6 217 59.4
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 1.7e-64 252.3 294 44.9
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 4.8e-59 234.2 179 62.6
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 3.0e-53 214.9 267 45.7
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 2.8e-51 208.4 348 35.3
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 1.8e-50 205.7 209 53.1
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 9.1e-50 203.4 136 77.2
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.6e-49 202.6 902 24.2
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.5e-47 195.3 183 53.0
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.4e-44 184.9 179 54.7
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.6e-41 176.0 179 52.5
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.3e-40 172.2 179 52.0
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.2e-37 161.0 1112 22.7
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 6.8e-37 160.6 125 60.0
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.7e-35 156.0 703 23.8
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 7.0e-34 150.6 208 35.1
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.7e-33 148.7 572 25.3
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 4.5e-33 147.9 98 75.5
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.7e-32 146.0 115 55.7
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 2.9e-32 145.2 137 51.1
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.8e-30 138.7 134 53.0
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 4.7e-30 137.9 154 44.8
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 6.1e-30 137.5 128 49.2
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.4e-29 136.3 107 70.1
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 4.9e-27 127.9 135 48.9
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.9e-24 118.2 110 51.8
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 4.7e-22 111.3 83 60.2
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 1.8e-21 109.4 59 84.7
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.0e-21 108.2 66 78.8
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 5.2e-21 107.8 59 83.1
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 5.2e-21 107.8 83 57.8
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.7e-19 102.8 77 62.3
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.1e-18 100.1 1029 20.9
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.4e-18 99.0 346 26.0
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 2.7e-17 95.5 84 54.8
CARHR059510 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.0e-17 94.4 78 69.2
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.1e-15 90.1 54 79.6
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.3e-13 82.4 384 23.2
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.7e-11 76.3 226 25.7
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.4e-11 74.3 74 58.1
C07p39710 Brassica napus HOM05D039519 ORTHO05D032788 2.7e-09 68.9 34 79.4
BolC7t44496H Brassica oleracea HOM05D039519 ORTHO05D032788 1.0e-08 67.0 30 86.7
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.3e-08 66.6 65 50.8
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 2.3e-08 65.9 104 41.3
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.9e-08 65.1 261 24.5
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 6.6e-08 64.3 140 34.3
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 7.3e-07 60.8 46 58.7


User provided reference genes

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