Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 4.5e-286 987.3 502 100.0
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 1.1e-255 886.3 516 88.8
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 4.1e-255 884.4 516 89.5
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 5.7e-249 864.0 508 86.6
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 1.9e-236 822.4 516 83.5
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 9.5e-228 793.5 519 80.9
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 1.4e-226 789.6 518 80.9
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 6.8e-226 787.3 519 80.7
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 2.6e-225 785.4 519 80.5
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 2.6e-225 785.4 519 80.5
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.6e-222 776.2 530 78.1
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 1.4e-218 763.1 507 79.1
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-218 763.1 507 79.1
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.8e-218 762.7 508 79.7
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 5.4e-215 751.1 509 78.8
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 1.6e-214 749.6 524 78.1
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 3.3e-212 741.9 509 78.0
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 3.2e-207 725.3 537 73.6
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 5.8e-193 677.9 521 70.6
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 8.8e-133 478.0 449 57.5
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 4.4e-132 475.7 516 52.7
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 7.0e-130 468.4 518 50.6
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 5.9e-129 465.3 527 50.1
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.0e-128 464.5 520 50.0
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 1.3e-128 464.2 499 53.7
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 1.7e-128 463.8 494 53.8
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 6.1e-126 455.3 494 50.8
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 1.8e-125 453.8 508 51.2
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 2.6e-124 449.9 509 50.5
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 4.8e-123 445.7 489 51.9
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.4e-122 443.4 519 49.7
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 3.1e-122 443.0 493 51.1
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 5.3e-122 442.2 518 50.0
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.0e-121 440.3 449 53.5
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 1.3e-120 437.6 455 54.1
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 1.7e-120 437.2 503 49.9
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.9e-120 436.4 510 49.4
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 1.1e-119 434.5 505 49.5
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 2.5e-119 433.3 520 49.0
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 3.2e-119 433.0 517 48.5
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 7.2e-119 431.8 511 48.3
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 2.7e-118 429.9 451 52.1
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 4.0e-117 426.0 514 47.7
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 6.8e-117 425.2 518 47.5
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.8e-115 419.9 572 45.1
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 3.1e-114 416.4 475 49.7
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 5.4e-114 415.6 456 49.3
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 1.2e-113 414.5 481 49.1
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 1.6e-113 414.1 446 52.0
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 1.3e-112 411.0 519 48.4
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 1.7e-112 410.6 592 44.3
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.1e-111 407.9 522 46.2
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 1.6e-110 404.1 526 47.0
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 2.1e-110 403.7 443 51.0
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 3.6e-110 402.9 446 50.4
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 6.1e-110 402.1 491 48.3
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 1.0e-109 401.4 477 48.6
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 2.3e-109 400.2 489 47.9
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 4.0e-109 399.4 451 49.9
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 6.8e-109 398.7 526 46.8
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 2.0e-108 397.1 451 49.2
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 2.0e-108 397.1 483 49.1
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.4e-108 396.0 454 48.7
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 4.4e-108 396.0 485 47.8
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.1e-106 391.3 486 47.5
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 1.1e-106 391.3 451 48.1
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 1.1e-106 391.3 481 47.6
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 1.6e-105 387.5 463 47.1
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 2.7e-105 386.7 451 48.8
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 2.7e-105 386.7 445 49.0
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.0e-104 384.8 472 47.5
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.3e-104 383.6 483 46.6
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.8e-104 382.9 443 48.3
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 6.6e-104 382.1 487 46.8
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 6.6e-104 382.1 457 46.6
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 4.3e-103 379.4 447 47.4
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 2.1e-102 377.1 444 47.7
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 1.2e-100 371.3 523 42.4
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 5.8e-100 369.0 440 45.7
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 1.7e-99 367.5 449 46.3
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 2.2e-99 367.1 403 51.4
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 2.2e-99 367.1 444 46.6
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.4e-98 364.4 499 43.3
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 1.6e-97 360.9 464 45.5
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 1.3e-96 357.8 464 45.3
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.3e-96 357.8 571 41.7
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 1.1e-95 354.8 525 43.6
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.5e-95 354.4 542 40.2
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 5.6e-95 352.4 355 53.2
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 2.3e-93 347.1 483 44.7
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.7e-91 340.9 491 44.6
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 1.5e-87 327.8 375 47.5
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 1.7e-83 314.3 456 42.5
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 1.4e-82 311.2 379 45.4
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.9e-82 310.8 410 44.4
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 3.0e-80 303.5 398 45.2
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 4.0e-77 293.1 465 38.5
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.1e-73 280.8 309 50.8
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.5e-71 274.6 207 69.1
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 4.0e-69 266.5 377 43.0
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 2.0e-68 264.2 445 36.0
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 1.3e-59 235.0 479 36.1
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 1.3e-54 218.4 191 61.8
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 6.0e-49 199.5 316 40.5
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 5.6e-47 193.0 464 32.5
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 1.6e-46 191.4 491 28.9
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.1e-46 191.0 288 41.3
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 6.9e-45 186.0 291 37.8
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 3.8e-43 180.3 483 31.5
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 1.1e-42 178.7 144 65.3
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 1.2e-41 175.3 466 29.2
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.9e-39 167.9 309 36.2
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 9.7e-39 165.6 213 43.2
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.8e-35 153.7 247 40.9
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 2.7e-33 147.5 143 53.1
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.2e-30 137.9 127 59.8
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 2.0e-28 131.3 142 59.2
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 2.6e-28 131.0 260 35.0
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 8.5e-27 125.9 120 55.8
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 2.1e-25 121.3 190 37.4
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.8e-16 89.4 131 37.4
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 5.7e-15 86.7 142 36.6
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 1.1e-13 82.4 199 29.6
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 1.1e-10 72.4 123 42.3
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 3.0e-08 64.3 160 30.6
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 9.7e-07 59.3 67 43.3
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 8.3e-06 56.2 107 34.6


User provided reference genes

Program Settings