Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 1.3e-179 632.9 316 100.0
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 2.7e-172 608.6 317 96.2
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 3.7e-169 598.2 316 95.3
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 6.5e-158 560.8 316 89.9
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 4.2e-157 558.1 318 90.3
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 9.4e-157 557.0 319 88.7
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 9.4e-157 557.0 319 88.4
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 1.0e-155 553.5 319 87.8
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 8.8e-155 550.4 327 85.0
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 4.1e-152 541.6 309 88.3
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 4.5e-143 511.5 319 83.7
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 9.4e-141 503.8 326 79.4
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 2.0e-122 443.0 277 78.3
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 2.2e-121 439.5 275 78.9
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.8e-120 436.4 287 74.6
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 4.1e-120 435.3 275 78.2
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 7.8e-119 431.0 316 69.3
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.1e-117 427.2 284 75.7
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 3.3e-117 425.6 284 75.4
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 5.6e-117 424.9 324 68.2
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 1.2e-116 423.7 276 75.7
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 1.2e-116 423.7 276 75.7
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 2.8e-116 422.5 308 70.5
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 4.7e-116 421.8 309 68.9
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 6.1e-116 421.4 277 74.4
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 8.0e-116 421.0 278 74.8
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 1.8e-115 419.9 276 74.6
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 1.8e-115 419.9 279 73.8
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 2.3e-115 419.5 276 74.3
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 2.3e-115 419.5 275 74.5
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 4.0e-115 418.7 319 67.7
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 5.2e-115 418.3 270 75.2
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 6.8e-115 417.9 263 78.3
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 8.9e-115 417.5 274 75.5
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 1.2e-114 417.2 254 78.7
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 1.5e-114 416.8 265 76.6
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 1.5e-114 416.8 275 74.5
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.0e-114 416.4 275 73.8
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 2.6e-114 416.0 319 67.4
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 2.6e-114 416.0 320 66.6
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 4.4e-114 415.2 276 75.0
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 4.4e-114 415.2 261 77.4
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 4.4e-114 415.2 259 77.6
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 5.8e-114 414.8 254 77.6
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 5.8e-114 414.8 299 69.6
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 5.8e-114 414.8 275 73.8
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 7.5e-114 414.5 275 73.8
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 1.3e-113 413.7 267 76.0
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 1.7e-113 413.3 212 94.3
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.7e-113 413.3 275 73.5
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 2.9e-113 412.5 295 69.8
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 2.9e-113 412.5 297 71.0
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 2.9e-113 412.5 277 72.9
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 4.9e-113 411.8 300 70.3
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 4.9e-113 411.8 315 67.9
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 4.9e-113 411.8 281 72.2
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 8.3e-113 411.0 287 72.8
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 2.4e-112 409.5 323 67.2
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 2.4e-112 409.5 336 64.0
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 3.2e-112 409.1 270 73.7
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 9.2e-112 407.5 281 72.2
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 2.7e-111 406.0 276 73.2
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 4.6e-111 405.2 267 74.2
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 1.0e-110 404.1 268 72.4
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 1.7e-110 403.3 254 76.4
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 1.7e-110 403.3 321 66.0
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 3.0e-110 402.5 320 65.0
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 6.6e-110 401.4 279 71.7
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 1.5e-109 400.2 271 72.0
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 2.5e-109 399.4 271 71.6
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 2.8e-108 396.0 266 72.9
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 9.8e-106 387.5 246 77.2
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 6.4e-105 384.8 276 71.0
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 3.2e-104 382.5 272 70.2
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 1.7e-102 376.7 287 67.2
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 5.2e-99 365.2 231 75.3
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 1.2e-98 364.0 315 61.9
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 2.6e-98 362.8 226 77.4
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 8.9e-91 337.8 233 71.7
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 8.9e-91 337.8 278 64.0
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 2.0e-90 336.7 275 64.4
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 8.4e-89 331.3 254 62.6
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 1.4e-88 330.5 203 77.8
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 9.3e-88 327.8 280 57.5
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 5.6e-85 318.5 233 68.7
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 4.9e-81 305.4 253 54.9
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 1.6e-76 290.4 243 56.8
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 3.8e-73 279.3 237 57.8
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 5.3e-67 258.8 280 53.9
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 5.3e-67 258.8 280 53.9
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 3.5e-63 246.1 153 79.1
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 6.2e-60 235.3 176 67.6
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 5.0e-57 225.7 135 77.0
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 9.3e-56 221.5 173 66.5
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 1.9e-53 213.8 237 51.5
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 2.2e-49 200.3 273 43.2
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.8e-43 180.6 270 41.5
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 5.0e-41 172.6 142 61.3
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 1.1e-40 171.4 112 75.0
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 1.1e-40 171.4 275 35.6
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 2.8e-36 156.8 98 74.5
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 5.5e-32 142.5 79 81.0
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 4.7e-23 112.8 266 30.5
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 3.4e-21 106.7 279 26.5
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 2.8e-20 103.6 88 59.1
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.6e-15 87.8 80 58.8
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 4.7e-15 86.3 143 40.6
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 4.0e-14 83.2 129 41.1
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 3.1e-11 73.6 311 26.0
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 7.0e-11 72.4 276 29.0
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 2.0e-10 70.9 278 26.3
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.7e-10 70.5 275 25.1
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 4.5e-10 69.7 275 25.1
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 4.5e-10 69.7 313 24.3
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 7.7e-10 68.9 282 27.0
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 7.7e-10 68.9 318 24.5
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 7.7e-10 68.9 318 24.5
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.3e-09 68.2 351 26.8
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.7e-09 67.8 286 24.8
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 2.3e-09 67.4 328 25.0
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 2.3e-09 67.4 312 26.0
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 2.3e-09 67.4 311 27.3
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 2.9e-09 67.0 328 25.0
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 2.9e-09 67.0 318 24.2
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 2.9e-09 67.0 318 24.2
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 3.8e-09 66.6 306 25.2
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 5.0e-09 66.2 280 23.9
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 6.6e-09 65.9 290 25.5
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.1e-08 65.1 349 25.2
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.1e-08 65.1 346 25.1
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.1e-08 65.1 303 25.1
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 1.5e-08 64.7 335 26.6
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 1.5e-08 64.7 277 25.3
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 1.9e-08 64.3 347 24.8
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.9e-08 64.3 281 26.3
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.9e-08 64.3 314 23.6
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.9e-08 64.3 314 23.6
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 1.9e-08 64.3 275 24.7
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.9e-08 64.3 275 24.7
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.5e-08 63.9 282 25.5
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 2.5e-08 63.9 298 26.2
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 2.5e-08 63.9 280 26.8
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 2.5e-08 63.9 316 24.7
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 3.3e-08 63.5 281 25.6
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 4.2e-08 63.2 343 24.5
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 4.2e-08 63.2 279 26.2
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 4.2e-08 63.2 320 25.6
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 4.2e-08 63.2 275 24.4
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 7.2e-08 62.4 275 26.5
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 7.2e-08 62.4 282 25.5
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 9.5e-08 62.0 355 24.5
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 9.5e-08 62.0 277 25.3
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 9.5e-08 62.0 348 24.1
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 1.2e-07 61.6 314 24.2
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.2e-07 61.6 314 23.2
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 1.2e-07 61.6 335 24.5
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.2e-07 61.6 282 24.5
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 2.1e-07 60.8 290 25.9
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 2.1e-07 60.8 311 24.1
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 2.1e-07 60.8 347 24.8
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 2.8e-07 60.5 279 25.1
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 2.8e-07 60.5 284 24.3
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 3.6e-07 60.1 266 26.3
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 3.6e-07 60.1 281 25.3
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 3.6e-07 60.1 275 24.7
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 4.7e-07 59.7 277 24.5
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 6.1e-07 59.3 345 24.1
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 6.1e-07 59.3 281 25.3
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.0e-06 58.5 318 25.5
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.0e-06 58.5 300 23.7
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.4e-06 58.2 284 25.0
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 1.4e-06 58.2 281 24.9
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.4e-06 58.2 276 25.4
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.4e-06 58.2 281 24.2
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.8e-06 57.8 283 25.1
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 2.3e-06 57.4 281 24.9
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 4.0e-06 56.6 295 24.7
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 4.0e-06 56.6 280 25.4
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 6.8e-06 55.8 280 23.9


User provided reference genes

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