Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G21630 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 3.6e-67 258.1 125 100.0
AL8G21650 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 3.1e-63 245.0 125 95.2
AT5G48630 Arabidopsis thaliana HOM05D004459 ORTHO05D005178 6.9e-63 243.8 125 94.4
Carub.0005s0820 Capsella rubella HOM05D004459 ORTHO05D005178 2.0e-62 242.3 123 95.9
CARHR183330 Cardamine hirsuta HOM05D004459 ORTHO05D005178 7.7e-62 240.4 125 92.8
BcaB07g30037 Brassica carinata HOM05D004459 ORTHO05D005178 5.0e-61 237.7 125 91.2
Carub.0008s0830 Capsella rubella HOM05D004459 ORTHO05D005178 1.1e-60 236.5 123 93.5
Sp2g19010 Schrenkiella parvula HOM05D004459 ORTHO05D005178 1.1e-60 236.5 125 91.2
BcaC03g17667 Brassica carinata HOM05D004459 ORTHO05D005178 1.8e-58 229.2 125 86.4
A02p37650 Brassica napus HOM05D004459 ORTHO05D005178 1.8e-58 229.2 125 86.4
BraA02t08747Z Brassica rapa HOM05D004459 ORTHO05D005178 1.8e-58 229.2 125 86.4
C02p56740 Brassica napus HOM05D004459 ORTHO05D005178 3.9e-58 228.0 125 85.6
BolC2t11742H Brassica oleracea HOM05D004459 ORTHO05D005178 3.9e-58 228.0 125 85.6
THA.LOC104822487 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 8.2e-56 220.3 125 81.6
COL.COLO4_16102 Corchorus olitorius HOM05D004459 ORTHO05D005178 3.3e-49 198.4 125 74.4
Manes.13G050900 Manihot esculenta HOM05D004459 ORTHO05D005178 7.5e-49 197.2 125 75.2
CARHR183320 Cardamine hirsuta HOM05D004459 ORTHO05D005178 2.2e-48 195.7 124 72.6
C02p56750 Brassica napus HOM05D004459 ORTHO05D005178 2.8e-48 195.3 125 72.8
BolC2t11743H Brassica oleracea HOM05D004459 ORTHO05D005178 2.8e-48 195.3 125 72.8
BraA02t08748Z Brassica rapa HOM05D004459 ORTHO05D005178 2.8e-48 195.3 125 72.8
Thhalv10004814m.g Eutrema salsugineum HOM05D004459 ORTHO05D005178 2.8e-48 195.3 125 72.8
Sp2g19020 Schrenkiella parvula HOM05D004459 ORTHO05D005178 2.8e-48 195.3 125 72.8
AL8G21660 Arabidopsis lyrata HOM05D004459 ORTHO05D005178 3.7e-48 194.9 125 72.0
BcaC03g17668 Brassica carinata HOM05D004459 ORTHO05D005178 3.7e-48 194.9 124 72.6
Potri.002G246800 Populus trichocarpa HOM05D004459 ORTHO05D005178 6.3e-48 194.1 120 77.5
Potri.014G194900 Populus trichocarpa HOM05D004459 ORTHO05D005178 6.3e-48 194.1 120 75.8
BcaB07g30038 Brassica carinata HOM05D004459 ORTHO05D005178 1.4e-47 193.0 125 72.0
Thecc.01G217400 Theobroma cacao HOM05D004459 ORTHO05D005178 1.4e-47 193.0 125 71.2
Ciclev10021820m.g Citrus clementina HOM05D004459 ORTHO05D005178 3.1e-47 191.8 121 73.6
Duzib133G1079 Durio zibethinus HOM05D004459 ORTHO05D005178 3.1e-47 191.8 125 71.2
Gohir.D07G096900 Gossypium hirsutum HOM05D004459 ORTHO05D005178 3.1e-47 191.8 125 72.8
THA.LOC104818977 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 3.1e-47 191.8 164 61.6
AT5G48640 Arabidopsis thaliana HOM05D004459 ORTHO05D005178 4.1e-47 191.4 121 71.9
Gohir.A07G092400 Gossypium hirsutum HOM05D004459 ORTHO05D005178 5.3e-47 191.0 125 72.8
Lalb_Chr19g0125891 Lupinus albus HOM05D004459 ORTHO05D005178 5.3e-47 191.0 125 72.0
PGR083G1823 Punica granatum HOM05D004459 ORTHO05D005178 5.3e-47 191.0 125 73.6
Carub.0005s0821 Capsella rubella HOM05D004459 ORTHO05D005178 1.2e-46 189.9 125 69.6
Lj1g0001756 Lotus japonicus HOM05D004459 ORTHO05D005178 1.2e-46 189.9 120 73.3
Prupe.8G196700 Prunus persica HOM05D004459 ORTHO05D005178 1.2e-46 189.9 125 72.0
A02p37660 Brassica napus HOM05D004459 ORTHO05D005178 2.0e-46 189.1 125 72.0
Carub.0008s0831 Capsella rubella HOM05D004459 ORTHO05D005178 2.7e-46 188.7 125 68.8
Lalb_Chr01g0022191 Lupinus albus HOM05D004459 ORTHO05D005178 5.9e-46 187.6 125 69.6
Aa31LG6G9700 Aethionema arabicum HOM05D004459 ORTHO05D005178 7.7e-46 187.2 125 68.0
Glyma.08G347600 Glycine max HOM05D004459 ORTHO05D005178 7.7e-46 187.2 125 70.4
Phvul.007G143100 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 7.7e-46 187.2 125 69.6
Psat3g149520 Pisum sativum HOM05D004459 ORTHO05D005178 2.2e-45 185.7 120 71.7
THA.LOC104822488 Tarenaya hassleriana HOM05D004459 ORTHO05D005178 2.2e-45 185.7 125 68.0
CiPaw.13G050600 Carya illinoinensis HOM05D004459 ORTHO05D005178 3.8e-45 184.9 120 72.5
QL02p059784 Quercus lobata HOM05D004459 ORTHO05D005178 3.8e-45 184.9 120 71.7
Atru.chr6.1442 Acer truncatum HOM05D004459 ORTHO05D005178 5.0e-45 184.5 124 71.0
Glyma.18G159000 Glycine max HOM05D004459 ORTHO05D005178 5.0e-45 184.5 125 68.8
Sabra02G0187900 Salix brachista HOM05D004459 ORTHO05D005178 5.0e-45 184.5 142 65.5
Sed0021622 Sechium edule HOM05D004459 ORTHO05D005178 5.0e-45 184.5 121 68.6
MELO3C023189.2 Cucumis melo HOM05D004459 ORTHO05D005178 8.5e-45 183.7 120 71.7
CsaV3_2G019680 Cucumis sativus L. HOM05D004459 ORTHO05D005178 8.5e-45 183.7 120 71.7
Eucgr.H00759 Eucalyptus grandis HOM05D004459 ORTHO05D005178 8.5e-45 183.7 125 72.0
Gohir.A11G140100 Gossypium hirsutum HOM05D004459 ORTHO05D005178 8.5e-45 183.7 125 71.2
Gohir.D11G146500 Gossypium hirsutum HOM05D004459 ORTHO05D005178 8.5e-45 183.7 125 71.2
Gorai.007G156900 Gossypium raimondii HOM05D004459 ORTHO05D005178 8.5e-45 183.7 125 71.2
Phvul.008G132450 Phaseolus vulgaris HOM05D004459 ORTHO05D005178 8.5e-45 183.7 126 70.6
RcHm_v2.0_Chr6g0283781 Rosa chinensis HOM05D004459 ORTHO05D005178 8.5e-45 183.7 120 70.0
A06p39040 Brassica napus HOM05D004459 ORTHO05D005178 1.9e-44 182.6 125 67.2
BraA06t26817Z Brassica rapa HOM05D004459 ORTHO05D005178 1.9e-44 182.6 125 67.2
Cfa021481 Carpinus fangiana HOM05D004459 ORTHO05D005178 1.9e-44 182.6 120 70.8
TPR.G6416 Trifolium pratense HOM05D004459 ORTHO05D005178 1.9e-44 182.6 120 70.8
BcaC06g30774 Brassica carinata HOM05D004459 ORTHO05D005178 3.2e-44 181.8 125 66.4
BolC7t44450H Brassica oleracea HOM05D004459 ORTHO05D005178 3.2e-44 181.8 125 66.4
TWI36G0336 Tripterygium wilfordii HOM05D004459 ORTHO05D005178 4.2e-44 181.4 120 71.7
FAN27G2700 Fragaria x ananassa HOM05D004459 ORTHO05D005178 5.5e-44 181.0 120 68.3
C07p39300 Brassica napus HOM05D004459 ORTHO05D005178 1.2e-43 179.9 125 65.6
Nn3g20066 Nelumbo nucifera HOM05D004459 ORTHO05D005178 1.6e-43 179.5 124 67.7
Nitab4.5_0002671g0020 Nicotiana tabacum HOM05D004459 ORTHO05D005178 2.7e-43 178.7 121 71.1
Nitab4.5_0003020g0110 Nicotiana tabacum HOM05D004459 ORTHO05D005178 2.7e-43 178.7 121 71.1
MSTRG.17987 Avicennia marina HOM05D004459 ORTHO05D005178 4.7e-43 177.9 121 69.4
Solyc06g083260.3 Solanum lycopersicum HOM05D004459 ORTHO05D005178 4.7e-43 177.9 121 70.2
Sopen06g034640 Solanum pennellii HOM05D004459 ORTHO05D005178 4.7e-43 177.9 121 70.2
PGSC0003DMG401020104 Solanum tuberosum HOM05D004459 ORTHO05D005178 4.7e-43 177.9 121 70.2
GSVIVG01006388001 Vitis vinifera HOM05D004459 ORTHO05D005178 4.7e-43 177.9 121 68.6
Actinidia23765 Actinidia chinensis HOM05D004459 ORTHO05D005178 6.1e-43 177.6 125 68.8
BolC2t11741H Brassica oleracea HOM05D004459 ORTHO05D005178 6.1e-43 177.6 101 84.2
CSS0012359 Camellia sinensis var. sinensis HOM05D004459 ORTHO05D005178 6.1e-43 177.6 121 68.6
Nitab4.5_0000403g0040 Nicotiana tabacum HOM05D004459 ORTHO05D005178 6.1e-43 177.6 121 70.2
Peaxi162Scf00487g00620 Petunia axillaris HOM05D004459 ORTHO05D005178 8.0e-43 177.2 121 71.1
unitig_0.g407 Utricularia gibba HOM05D004459 ORTHO05D005178 1.4e-42 176.4 120 70.8
CiPaw.14G040200 Carya illinoinensis HOM05D004459 ORTHO05D005178 1.8e-42 176.0 125 67.2
CANSAT01G2987 Cannabis sativa HOM05D004459 ORTHO05D005178 2.3e-42 175.6 126 66.7
CAN.G874.13 Capsicum annuum HOM05D004459 ORTHO05D005178 3.0e-42 175.3 121 69.4
MD10G1157700 Malus domestica HOM05D004459 ORTHO05D005178 3.0e-42 175.3 120 68.3
MD10G1158300 Malus domestica HOM05D004459 ORTHO05D005178 3.0e-42 175.3 120 68.3
Actinidia09461 Actinidia chinensis HOM05D004459 ORTHO05D005178 4.0e-42 174.9 125 68.8
PSO017G6853 Papaver somniferum HOM05D004459 ORTHO05D005178 5.2e-42 174.5 121 66.1
PSO063G5689 Papaver somniferum HOM05D004459 ORTHO05D005178 5.2e-42 174.5 121 66.1
MSTRG.20974 Avicennia marina HOM05D004459 ORTHO05D005178 8.8e-42 173.7 121 69.4
Nitab4.5_0005866g0010 Nicotiana tabacum HOM05D004459 ORTHO05D005178 8.8e-42 173.7 120 69.2
HanXRQChr01g0015361 Helianthus annuus HOM05D004459 ORTHO05D005178 1.2e-41 173.3 121 68.6
Cc01_g16560 Coffea canephora HOM05D004459 ORTHO05D005178 2.0e-41 172.6 120 69.2
SGA_v2.0_scaffold104G30089 Striga asiatica HOM05D004459 ORTHO05D005178 2.8e-40 168.7 120 66.7
Lsat_1_v5_gn_5_177641 Lactuca sativa HOM05D004459 ORTHO05D005178 3.7e-40 168.3 120 66.7
SalBow6G5468 Salvia bowleyana HOM05D004459 ORTHO05D005178 3.7e-40 168.3 121 67.8
Ah.08g214750 Amaranthus hybridus HOM05D004459 ORTHO05D005178 4.8e-40 167.9 120 68.3
vmacro14724 Vaccinium macrocarpon HOM05D004459 ORTHO05D005178 6.3e-40 167.5 125 64.0
Aqoxy2G03940 Aquilegia oxysepala HOM05D004459 ORTHO05D005178 8.3e-40 167.2 125 62.4
AUR62001146 Chenopodium quinoa HOM05D004459 ORTHO05D005178 8.3e-40 167.2 120 68.3
EL10Ac5g11649 Beta vulgaris HOM05D004459 ORTHO05D005178 1.1e-39 166.8 120 67.5
EL10Ac7g17932 Beta vulgaris HOM05D004459 ORTHO05D005178 1.1e-39 166.8 120 67.5
AUR62016530 Chenopodium quinoa HOM05D004459 ORTHO05D005178 1.1e-39 166.8 120 68.3
HPP92_001407 Vanilla planifolia HOM05D004459 ORTHO05D005178 1.8e-39 166.0 130 61.5
Sc05g0001910 Simmondsia chinensis HOM05D004459 ORTHO05D005178 3.1e-39 165.2 122 68.9
ECA248G3763 Erigeron canadensis HOM05D004459 ORTHO05D005178 4.1e-39 164.9 119 68.9
ATR0561G002 Amborella trichopoda HOM05D004459 ORTHO05D005178 1.2e-38 163.3 121 64.5
ECA236G4121 Erigeron canadensis HOM05D004459 ORTHO05D005178 1.2e-38 163.3 122 63.1
Pp3c23_12870 Physcomitrium patens HOM05D004459 ORTHO05D005178 2.0e-38 162.5 120 64.2
Pp3c24_1910 Physcomitrium patens HOM05D004459 ORTHO05D005178 2.0e-38 162.5 125 62.4
HanXRQChr04g0108291 Helianthus annuus HOM05D004459 ORTHO05D005178 3.5e-38 161.8 122 61.5
unitig_60.g25580 Utricularia gibba HOM05D000036 ORTHO05D001038 3.5e-38 161.8 120 65.0
Mapoly0005s0080 Marchantia polymorpha HOM05D004459 ORTHO05D005178 1.7e-37 159.5 120 62.5
Os09g0504400 Oryza sativa ssp. japonica HOM05D004459 ORTHO05D005178 8.6e-37 157.1 125 60.8
Zm00001eb317580 Zea mays HOM05D004459 ORTHO05D005178 2.5e-36 155.6 125 60.8
MBI07_g27657_MAGBIO Magnolia biondii HOM05D004459 ORTHO05D005178 5.5e-36 154.5 126 59.5
Gorai.001G104300 Gossypium raimondii HOM05D004459 ORTHO05D005178 1.6e-35 152.9 92 76.1
FAN15G2342 Fragaria x ananassa HOM05D004459 ORTHO05D005178 2.1e-35 152.5 120 61.7
Haze_03347 Corylus avellana HOM05D004459 ORTHO05D005178 1.0e-34 150.2 120 62.5
AagrBONN_evm.TU.Sc2ySwM_344.4413 Anthoceros agrestis HOM05D004459 ORTHO05D005178 8.9e-34 147.1 120 57.5
BolC2t11738H Brassica oleracea HOM05D004459 ORTHO05D005178 3.4e-33 145.2 95 76.8
arahy.Tifrunner.gnm1.ann1.J5WB5S Arachis hypogaea HOM05D004459 ORTHO05D005178 4.4e-33 144.8 108 63.9
QL02p059745 Quercus lobata HOM05D004459 ORTHO05D005178 4.9e-32 141.4 93 69.9
SMO147G0024 Selaginella moellendorffii HOM05D004459 ORTHO05D005178 8.3e-32 140.6 121 53.7
Lsat_1_v5_gn_3_115720 Lactuca sativa HOM05D004459 ORTHO05D005178 1.8e-31 139.4 120 58.3
ClCG02G000030 Citrullus lanatus HOM05D004459 ORTHO05D005178 2.4e-31 139.0 184 45.1
Medtr7g055650 Medicago truncatula HOM05D004459 ORTHO05D005178 2.4e-31 139.0 90 72.2
Migut.D02511 Erythranthe guttata HOM05D004459 ORTHO05D005178 4.5e-30 134.8 95 67.4
FAN24G3552 Fragaria x ananassa HOM05D004459 ORTHO05D005178 7.8e-30 134.0 91 64.8
Hma1.2p1_0149F.1_g066510 Hydrangea macrophylla HOM05D004459 ORTHO05D005178 7.8e-30 134.0 91 70.3
DCAR_000515 Daucus carota HOM05D004459 ORTHO05D005178 1.9e-28 129.4 90 68.9
MD05G1169500 Malus domestica HOM05D004459 ORTHO05D005178 1.9e-28 129.4 125 54.4
TAR365G0904 Trochodendron aralioides HOM05D004459 ORTHO05D005178 4.3e-28 128.3 90 67.8
arahy.Tifrunner.gnm1.ann1.WFM4SD Arachis hypogaea HOM05D004459 ORTHO05D005178 7.3e-28 127.5 84 67.9
C02p56710 Brassica napus HOM05D004459 ORTHO05D005178 1.4e-26 123.2 95 70.5
Eucgr.L03048 Eucalyptus grandis HOM05D004459 ORTHO05D005178 4.0e-26 121.7 77 71.4
Lj2A1122G39 Lonicera japonica HOM05D004459 ORTHO05D005178 4.0e-26 121.7 89 66.3
CAN.G1010.1 Capsicum annuum HOM05D004459 ORTHO05D005178 8.9e-26 120.6 89 65.2
CDE11G0844 Ceratophyllum demersum HOM05D001606 ORTHO05D002266 3.4e-25 118.6 87 62.1
Duzib138G0860 Durio zibethinus HOM05D004459 ORTHO05D005178 3.4e-25 118.6 125 51.2
SHI14518 Sapria himalayana HOM05D004459 ORTHO05D005178 4.3e-20 101.7 79 57.0
Hund18441 Selenicereus undatus HOM05D004459 ORTHO05D005178 4.7e-19 98.2 79 60.8
BolC2t11736H Brassica oleracea HOM05D004459 ORTHO05D005178 8.9e-18 94.0 49 89.8
Hund05584 Selenicereus undatus HOM05D004459 ORTHO05D005178 2.7e-14 82.4 49 77.6
Haze_26318 Corylus avellana HOM05D004459 ORTHO05D005178 3.5e-14 82.0 123 37.4
Thhalv10004803m.g Eutrema salsugineum HOM05D004459 ORTHO05D005178 6.0e-14 81.3 44 86.4
Cre03.g174476 Chlamydomonas reinhardtii HOM05D004459 ORTHO05D005178 1.9e-12 76.3 102 35.3
PRCOL_00002525 Prasinoderma coloniale HOM05D004459 ORTHO05D005178 1.8e-10 69.7 108 35.2
Lsat_1_v5_gn_5_190341 Lactuca sativa HOM05D004459 ORTHO05D007437 2.3e-10 69.3 53 60.4
VMungo1383G0758 Vigna mungo HOM05D004459 ORTHO05D005178 4.9e-08 61.6 41 65.9
FvH4_2g18390 Fragaria vesca HOM05D004459 ORTHO05D005178 1.4e-07 60.1 41 61.0
THA.LOC104806208 Tarenaya hassleriana HOM05D000604 ORTHO05D000990 1.6e-06 56.6 110 27.3


User provided reference genes

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