Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 7.4e-118 427.2 209 100.0
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 1.2e-51 207.2 138 75.4
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 4.6e-51 205.3 138 74.6
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 3.0e-50 202.6 138 75.4
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 6.2e-48 194.9 137 70.1
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 5.8e-46 188.3 136 67.6
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 5.8e-46 188.3 136 67.6
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 2.9e-45 186.0 137 66.4
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 2.9e-45 186.0 137 67.9
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 2.9e-45 186.0 138 67.4
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 8.4e-45 184.5 137 65.7
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 8.4e-45 184.5 137 65.7
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 1.1e-44 184.1 136 67.6
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 2.4e-44 183.0 138 70.3
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 9.2e-44 181.0 137 66.4
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 1.3e-42 177.2 137 65.0
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 1.3e-42 177.2 136 65.4
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 4.3e-41 172.2 138 58.7
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 7.1e-28 128.3 139 48.2
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.8e-24 116.3 110 49.1
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 4.8e-24 115.5 114 48.2
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 1.8e-23 113.6 81 69.1
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 6.9e-23 111.7 114 46.5
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.5e-22 109.0 114 45.6
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.3e-21 107.5 110 47.3
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 3.8e-21 105.9 119 43.7
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 3.8e-21 105.9 119 43.7
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 6.5e-21 105.1 140 40.0
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 1.4e-20 104.0 134 41.8
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 3.2e-20 102.8 110 41.8
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 3.2e-20 102.8 134 41.8
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 2.1e-19 100.1 109 43.1
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 3.5e-19 99.4 111 40.5
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 4.6e-19 99.0 114 42.1
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 7.9e-19 98.2 127 38.6
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 1.3e-18 97.4 121 41.3
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 1.3e-18 97.4 116 41.4
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 1.3e-18 97.4 105 43.8
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 3.9e-18 95.9 109 42.2
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 5.1e-18 95.5 137 35.8
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 6.7e-18 95.1 58 77.6
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 1.5e-17 94.0 105 41.9
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 2.5e-17 93.2 108 43.5
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 3.3e-17 92.8 101 43.6
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 5.7e-17 92.0 109 37.6
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 1.3e-16 90.9 109 40.4
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.3e-16 90.9 109 46.8
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 2.1e-16 90.1 109 36.7
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 2.8e-16 89.7 140 36.4
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 2.8e-16 89.7 140 36.4
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 2.8e-16 89.7 127 37.8
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 3.7e-16 89.4 138 34.8
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 3.7e-16 89.4 109 34.9
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 6.2e-16 88.6 140 34.3
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 8.2e-16 88.2 140 37.9
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 8.2e-16 88.2 138 36.2
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.4e-15 87.4 144 35.4
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 1.8e-15 87.0 137 35.8
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 2.4e-15 86.7 109 38.5
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 2.4e-15 86.7 109 37.6
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 2.4e-15 86.7 109 37.6
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 4.0e-15 85.9 114 40.4
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 4.0e-15 85.9 109 33.9
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 5.3e-15 85.5 121 33.9
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 5.3e-15 85.5 105 37.1
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 5.3e-15 85.5 105 37.1
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 9.0e-15 84.7 140 32.9
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 1.2e-14 84.3 109 33.0
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 2.6e-14 83.2 137 38.0
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 2.6e-14 83.2 128 35.9
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 3.4e-14 82.8 109 33.9
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 3.4e-14 82.8 142 36.6
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 3.4e-14 82.8 182 29.1
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 4.5e-14 82.4 130 32.3
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 5.8e-14 82.0 105 36.2
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 1.0e-13 81.3 106 42.5
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 1.0e-13 81.3 109 34.9
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 1.0e-13 81.3 101 37.6
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 1.7e-13 80.5 118 37.3
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 2.2e-13 80.1 120 32.5
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 5.0e-13 79.0 109 34.9
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 6.5e-13 78.6 131 33.6
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 6.5e-13 78.6 105 37.1
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 8.4e-13 78.2 138 31.2
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 1.4e-12 77.4 105 35.2
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.4e-12 77.4 105 35.2
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 5.5e-12 75.5 139 33.1
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 9.3e-12 74.7 132 31.8
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.2e-11 74.3 105 34.3
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 2.1e-11 73.6 109 34.9
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 2.1e-11 73.6 138 31.9
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 2.7e-11 73.2 158 27.8
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 3.5e-11 72.8 123 33.3
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 3.5e-11 72.8 124 33.9
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 6.1e-11 72.0 128 33.6
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 6.1e-11 72.0 128 33.6
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 1.0e-10 71.2 107 30.8
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 5.1e-10 68.9 102 34.3
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 6.7e-10 68.6 41 65.9
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 2.5e-09 66.6 40 65.0
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 5.7e-09 65.5 137 31.4
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 5.7e-09 65.5 42 59.5
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 2.2e-08 63.5 105 33.3
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 6.3e-08 62.0 41 61.0
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 1.1e-07 61.2 41 56.1
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 3.1e-07 59.7 41 53.7
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 3.1e-07 59.7 42 57.1
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 6.9e-07 58.5 41 48.8
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 9.0e-07 58.2 119 31.1
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 2.6e-06 56.6 48 43.8
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 4.5e-06 55.8 118 30.5


User provided reference genes

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