Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 8.0e-222 773.5 398 100.0
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 5.8e-212 740.7 398 95.2
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 7.8e-209 730.3 399 95.0
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 1.1e-205 719.9 398 93.0
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 3.1e-197 691.8 399 90.5
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 1.2e-196 689.9 398 89.4
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 6.4e-195 684.1 398 88.4
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 6.4e-195 684.1 398 88.4
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 5.4e-194 681.0 398 88.4
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 7.1e-194 680.6 398 88.4
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 9.2e-194 680.2 398 87.7
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 6.2e-190 667.5 393 87.8
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 1.4e-186 656.4 398 87.4
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 2.6e-180 635.6 401 82.8
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 2.9e-163 578.9 410 77.1
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 8.2e-158 560.8 396 76.3
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 1.8e-157 559.7 400 75.2
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 9.0e-157 557.4 360 80.3
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 1.2e-156 557.0 359 80.2
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 1.2e-156 557.0 410 74.6
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 5.9e-156 554.7 405 74.6
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 3.8e-155 552.0 387 74.2
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 5.0e-155 551.6 362 79.6
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 1.4e-154 550.1 393 75.1
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 4.6e-153 545.0 406 71.4
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.4e-152 543.5 396 73.7
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 1.5e-151 540.0 362 77.1
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 2.0e-151 539.7 410 72.0
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 2.5e-151 539.3 383 73.4
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 4.3e-151 538.5 366 76.8
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 4.3e-151 538.5 348 79.6
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.7e-150 536.6 409 71.1
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 2.8e-150 535.8 346 80.6
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 4.8e-150 535.0 412 70.9
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.1e-149 533.9 402 71.1
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 1.4e-149 533.5 346 80.9
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 1.8e-149 533.1 368 74.2
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 2.4e-149 532.7 416 70.0
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 2.4e-149 532.7 369 75.3
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 5.3e-149 531.6 354 76.6
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 6.9e-149 531.2 365 75.9
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 6.9e-149 531.2 404 70.5
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 1.2e-148 530.4 402 70.1
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.5e-148 530.0 408 69.9
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.5e-148 530.0 402 69.7
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.5e-148 530.0 402 69.7
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 1.5e-148 530.0 364 76.6
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.4e-148 528.9 402 69.9
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 5.9e-148 528.1 362 75.4
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 7.7e-148 527.7 363 76.3
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 1.0e-147 527.3 374 73.5
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 1.9e-146 523.1 377 72.7
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 5.5e-146 521.5 365 74.0
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 7.2e-146 521.2 374 74.6
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 1.6e-145 520.0 364 75.8
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 6.1e-145 518.1 393 69.2
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.0e-144 517.3 364 75.8
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 1.0e-144 517.3 392 71.2
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 2.3e-144 516.2 388 71.6
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 3.0e-144 515.8 388 71.4
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 6.7e-144 514.6 370 72.4
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 2.0e-143 513.1 380 73.4
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 3.3e-143 512.3 375 73.3
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 9.7e-143 510.8 400 71.0
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 1.3e-142 510.4 346 75.7
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 2.2e-142 509.6 404 67.3
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 1.1e-141 507.3 351 75.5
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 5.3e-141 505.0 359 73.8
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 7.0e-141 504.6 344 77.3
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 1.0e-139 500.7 397 69.3
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 1.7e-139 500.0 392 69.6
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 2.9e-139 499.2 352 75.0
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 1.1e-138 497.3 409 68.0
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 9.4e-138 494.2 393 69.0
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 1.0e-136 490.7 370 71.4
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 2.3e-136 489.6 343 75.8
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 1.3e-134 483.8 359 71.6
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 1.3e-134 483.8 359 71.6
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 1.1e-133 480.7 361 70.4
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 1.4e-133 480.3 352 73.0
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.8e-133 479.9 311 79.7
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 4.5e-132 475.3 351 68.4
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 4.5e-132 475.3 318 76.1
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 2.5e-130 469.5 366 69.4
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 7.2e-130 468.0 296 80.7
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 6.1e-129 464.9 380 66.8
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 1.8e-128 463.4 318 72.6
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 6.3e-126 454.9 319 73.4
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 1.8e-125 453.4 333 71.8
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 6.5e-123 444.9 302 76.2
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 8.0e-121 438.0 326 69.9
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 1.0e-120 437.6 450 56.9
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 4.2e-114 415.6 380 62.4
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 1.4e-112 410.6 285 73.3
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 5.8e-103 378.6 326 60.1
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.7e-102 377.1 239 79.1
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 7.8e-100 368.2 479 49.9
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 3.5e-92 342.8 383 60.1
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 2.6e-87 326.6 370 58.6
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 2.1e-84 317.0 422 47.9
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 3.4e-79 299.7 221 71.9
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.3e-78 297.7 201 74.1
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 1.9e-77 293.9 326 46.0
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 2.4e-77 293.5 313 49.2
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 3.2e-77 293.1 291 58.1
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 3.6e-73 279.6 327 45.6
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 8.4e-70 268.5 272 52.2
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 8.4e-70 268.5 905 29.0
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 2.6e-63 246.9 158 77.8
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 4.5e-55 219.5 143 79.0
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 3.0e-51 206.8 128 83.6
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 2.0e-47 194.1 157 68.2
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 1.0e-43 181.8 177 60.5
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 2.4e-40 170.6 110 80.0
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 4.3e-34 149.8 328 33.5
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.8e-24 117.9 82 72.0
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 4.5e-15 86.7 81 58.0
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 2.2e-14 84.3 46 87.0
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 3.2e-13 80.5 261 26.8
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 5.5e-13 79.7 48 79.2
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 1.6e-12 78.2 274 28.5
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 6.1e-12 76.3 49 75.5
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 9.8e-10 68.9 74 54.1
MD05G1159400 Malus domestica HOM05D006407 ORTHO05D008079 6.5e-06 56.2 61 52.5


User provided reference genes

Program Settings