Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-108 396.7 199 100.0
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.0e-80 302.8 311 56.3
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 4.2e-78 295.0 311 54.3
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-77 293.5 311 54.3
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.2e-77 293.5 311 54.3
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 8.7e-76 287.3 304 54.6
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.4e-75 284.3 308 52.3
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.1e-73 278.5 311 50.8
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.1e-73 278.5 311 51.1
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 6.9e-73 277.7 311 51.1
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.0e-72 276.2 308 50.6
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-72 276.2 311 50.8
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 2.0e-72 276.2 309 52.4
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.3e-71 273.5 312 50.6
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.9e-71 272.3 284 56.3
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.5e-71 271.2 311 50.8
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 8.5e-71 270.8 308 50.6
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 3.2e-70 268.9 308 49.7
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 4.2e-70 268.5 308 49.7
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 4.2e-70 268.5 311 49.2
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.2e-70 268.5 311 50.2
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 5.5e-70 268.1 311 49.2
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.5e-70 268.1 309 50.2
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 9.3e-70 267.3 311 49.8
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-69 266.9 308 49.4
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 2.3e-68 262.7 308 50.3
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 5.7e-67 258.1 298 49.7
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 9.7e-67 257.3 299 49.5
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.3e-65 251.5 308 48.1
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 9.1e-65 250.8 311 47.9
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.0e-64 249.6 308 48.4
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.6e-61 240.0 311 46.3
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 6.1e-61 238.0 309 46.3
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.4e-60 236.9 309 45.6
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 3.9e-60 235.3 304 45.1
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 3.9e-60 235.3 305 45.9
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.6e-59 232.6 310 45.8
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 4.4e-59 231.9 305 45.2
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.0e-56 223.0 301 44.9
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.8e-52 209.9 311 42.8
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.3e-52 209.5 305 43.3
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 2.2e-50 203.0 309 42.4
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 4.5e-48 195.3 291 42.6
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-47 193.7 148 67.6
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-47 193.7 148 67.6
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.9e-47 192.6 284 41.5
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 5.2e-44 181.8 241 47.3
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-39 167.2 352 34.1
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 8.5e-39 164.5 296 34.5
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.1e-38 164.1 296 35.5
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.5e-38 163.7 296 35.1
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.9e-38 163.3 297 34.0
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.5e-38 162.9 296 35.1
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 2.5e-38 162.9 296 32.4
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 2.5e-38 162.9 294 33.7
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 4.2e-38 162.2 141 59.6
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 4.2e-38 162.2 297 34.3
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 4.2e-38 162.2 296 34.1
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.2e-37 160.6 291 33.3
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.1e-37 159.8 297 33.7
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 2.7e-37 159.5 291 33.0
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 2.7e-37 159.5 299 33.1
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 3.6e-37 159.1 296 32.4
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 4.7e-37 158.7 298 32.9
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 4.7e-37 158.7 303 33.0
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 6.1e-37 158.3 299 33.4
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 6.1e-37 158.3 296 33.1
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 8.0e-37 157.9 298 33.2
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 8.0e-37 157.9 308 32.1
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.0e-36 157.5 291 33.0
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.0e-36 157.5 303 33.0
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 1.0e-36 157.5 295 33.9
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.4e-36 157.1 290 33.1
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.8e-36 156.8 296 32.8
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.8e-36 156.8 291 34.4
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 4.0e-36 155.6 295 33.6
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 4.0e-36 155.6 297 34.0
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 5.2e-36 155.2 298 33.6
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 5.2e-36 155.2 296 32.1
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 5.2e-36 155.2 309 33.3
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 6.8e-36 154.8 290 34.5
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 6.8e-36 154.8 291 32.3
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 8.8e-36 154.5 301 33.6
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 1.2e-35 154.1 298 32.2
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.2e-35 154.1 303 32.7
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.2e-35 154.1 298 31.9
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.2e-35 154.1 295 33.6
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.6e-35 152.9 292 32.5
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 3.4e-35 152.5 296 33.4
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 3.4e-35 152.5 309 32.4
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 3.4e-35 152.5 296 33.1
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 4.4e-35 152.1 291 32.3
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 4.4e-35 152.1 299 32.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 4.4e-35 152.1 296 32.8
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 5.7e-35 151.8 273 35.9
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 5.7e-35 151.8 311 32.2
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 7.5e-35 151.4 296 32.8
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 7.5e-35 151.4 299 32.1
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 9.8e-35 151.0 291 32.3
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 9.8e-35 151.0 291 31.6
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 9.8e-35 151.0 298 32.2
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 1.3e-34 150.6 291 32.6
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.3e-34 150.6 301 31.6
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.7e-34 150.2 305 31.5
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.7e-34 150.2 305 31.5
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 2.2e-34 149.8 290 32.8
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 2.2e-34 149.8 277 32.9
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.7e-34 149.1 296 31.8
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 4.8e-34 148.7 292 32.2
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 6.3e-34 148.3 300 32.7
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 8.3e-34 147.9 301 32.6
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.3e-34 147.9 290 32.4
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.1e-33 147.5 298 32.2
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.4e-33 147.1 270 35.6
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.4e-33 146.4 297 32.0
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 3.1e-33 146.0 291 32.6
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 4.1e-33 145.6 303 31.0
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 7.0e-33 144.8 302 31.8
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 7.0e-33 144.8 122 61.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 7.0e-33 144.8 304 29.9
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 3.5e-32 142.5 287 31.0
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 3.5e-32 142.5 305 31.1
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 3.5e-32 142.5 299 31.4
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 4.5e-32 142.1 306 31.4
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 4.5e-32 142.1 306 31.4
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.9e-32 141.7 290 31.7
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 5.9e-32 141.7 287 30.3
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 7.7e-32 141.4 290 31.0
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.7e-31 140.2 299 32.1
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.7e-31 140.2 286 30.8
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.2e-31 139.8 299 30.8
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 2.2e-31 139.8 296 30.7
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.9e-31 139.4 305 31.5
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 5.0e-31 138.7 289 30.4
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 6.5e-31 138.3 289 30.8
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 8.5e-31 137.9 303 32.7
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.9e-30 136.7 319 29.2
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.5e-30 134.4 196 41.3
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 3.6e-29 132.5 285 32.6
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 3.0e-28 129.4 290 29.7
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 3.0e-28 129.4 280 30.0
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 4.4e-27 125.6 101 65.3
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 6.3e-26 121.7 277 29.6
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 6.3e-26 121.7 277 29.6
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 8.3e-26 121.3 285 29.5
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.4e-25 120.6 365 26.0
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 3.1e-25 119.4 101 62.4
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 3.1e-25 119.4 101 62.4
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-24 117.5 271 28.4
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.1e-22 110.9 145 41.4
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 2.5e-22 109.8 275 29.1
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.8e-21 106.3 133 39.1
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 4.7e-21 105.5 285 27.7
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 3.0e-20 102.8 133 41.4
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.8e-20 101.7 242 29.3
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.2e-19 100.9 141 38.3
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 3.4e-19 99.4 140 39.3
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.7e-18 97.1 83 53.0
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 2.0e-16 90.1 127 35.4
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 7.8e-16 88.2 76 59.2
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 2.6e-11 73.2 213 28.6
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.3e-10 70.9 83 44.6
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 6.6e-07 58.5 77 40.3


User provided reference genes

Program Settings