Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 0.0e+00 2191.8 1135 100.0
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 0.0e+00 2003.4 1129 92.5
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 0.0e+00 1919.4 1136 87.4
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 0.0e+00 1798.1 1132 83.2
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 0.0e+00 1788.5 1120 82.9
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 0.0e+00 1782.7 1135 81.4
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 0.0e+00 1726.5 1135 78.6
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 0.0e+00 1722.6 1123 78.7
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 0.0e+00 1713.4 1135 78.3
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 0.0e+00 1708.7 1136 78.3
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 0.0e+00 1697.9 1136 77.8
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 0.0e+00 1696.8 1135 77.7
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 0.0e+00 1601.6 1129 72.9
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 0.0e+00 1406.0 1134 64.4
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1097.8 1147 51.4
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1092.4 1159 52.0
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1075.5 1158 50.5
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1075.1 1155 50.9
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 5.0e-309 1064.7 1157 50.0
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 6.5e-309 1064.3 1151 51.2
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.5e-308 1062.4 1156 50.0
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 2.7e-307 1058.9 1234 48.3
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 1.1e-305 1053.5 1147 49.6
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 1.7e-304 1049.7 1158 49.8
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 8.2e-304 1047.3 1157 49.5
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 8.2e-304 1047.3 1149 50.0
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.7e-301 1039.6 1150 49.7
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 1.4e-300 1036.6 1161 48.8
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 1.2e-299 1033.5 1160 49.1
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 3.3e-297 1025.4 1161 47.2
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 1.2e-294 1016.9 1164 48.2
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 2.6e-294 1015.8 1138 48.7
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.9e-292 1009.6 1155 48.7
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 3.2e-292 1008.8 1148 47.7
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 1.2e-286 990.3 1161 47.5
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 3.8e-285 985.3 1144 46.4
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 3.2e-284 982.2 1148 47.8
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 4.7e-283 978.4 1162 46.7
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 4.7e-283 978.4 1096 48.5
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 4.4e-281 971.8 1145 46.7
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 4.1e-279 965.3 1151 47.5
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 2.5e-276 956.1 1207 45.7
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.3e-274 949.5 1148 46.6
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 4.0e-274 948.7 1150 46.3
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 1.5e-273 946.8 1150 46.8
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 4.9e-272 941.8 1153 46.5
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 2.7e-270 936.0 1144 46.4
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 5.9e-270 934.9 1100 46.1
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 1.3e-269 933.7 1155 45.9
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 4.3e-268 928.7 1147 45.6
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 1.6e-267 926.8 1155 45.5
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 8.0e-267 924.5 1156 45.8
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 8.0e-267 924.5 1147 44.6
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 3.1e-266 922.5 1119 46.2
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 8.3e-264 914.4 1143 44.8
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 9.2e-263 911.0 1136 45.7
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 9.5e-260 901.0 1142 44.0
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.6e-259 900.2 1148 43.6
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 4.7e-259 898.7 1135 44.1
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 4.0e-258 895.6 1152 43.2
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 5.2e-258 895.2 1147 43.3
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 6.8e-258 894.8 1150 45.5
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.0e-257 893.3 1160 43.7
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 5.8e-257 891.7 1135 44.0
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 7.5e-257 891.3 1152 44.3
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.7e-256 890.2 1154 44.5
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.4e-255 887.1 1158 42.5
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.9e-252 876.7 1147 42.4
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 2.5e-252 876.3 1142 44.0
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.1e-247 860.9 1120 42.9
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 5.1e-245 852.0 1236 41.8
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 5.6e-244 848.6 1070 45.9
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 1.1e-236 824.3 1134 42.4
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.8e-234 817.0 1166 41.3
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 3.1e-234 816.2 1127 41.3
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.2e-233 814.3 1100 44.2
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 4.4e-233 812.4 1135 41.8
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 4.6e-230 802.4 1009 45.4
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 3.4e-225 786.2 1096 42.8
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.3e-224 784.3 1151 40.1
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 7.9e-222 775.0 1045 44.5
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.6e-219 767.3 1110 40.3
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 3.7e-219 766.1 1076 41.4
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 8.1e-219 765.0 524 73.1
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 3.0e-213 746.5 1041 40.2
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 8.7e-213 745.0 1141 39.4
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.3e-210 735.7 1165 38.5
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 4.2e-207 726.1 1138 38.6
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.8e-197 694.1 949 42.8
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 2.0e-196 690.6 1067 38.6
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.3e-195 688.0 1158 36.4
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 8.2e-195 685.3 1135 37.6
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 3.1e-194 683.3 938 43.5
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.5e-177 626.7 428 76.6
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 4.2e-175 619.8 909 40.3
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 5.9e-169 599.4 930 37.5
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.5e-148 531.6 1048 34.5
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 3.4e-140 503.8 1181 31.1
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.4e-123 446.4 1043 34.0
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 1.3e-120 438.7 1191 29.6
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 2.5e-111 407.9 653 37.7
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.5e-103 381.3 435 47.6
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 2.1e-102 378.3 722 33.9
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 6.5e-99 366.7 1134 28.0
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.4e-98 365.5 500 43.4
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.4e-93 348.2 441 46.3
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.2e-82 310.8 335 47.8
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.3e-78 299.3 232 59.5
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.5e-76 292.4 434 44.2
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 6.1e-65 253.8 265 50.9
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 1.0e-64 253.1 1295 23.9
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 4.4e-63 247.7 232 51.3
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.3e-54 219.5 205 56.6
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.1e-53 216.5 313 43.1
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.5e-50 205.3 155 60.0
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 9.8e-47 193.4 178 54.5
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.9e-38 165.2 123 66.7
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 3.5e-36 158.3 184 46.2
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 1.8e-32 146.0 148 54.1
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 1.8e-32 146.0 148 54.1
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 6.8e-32 144.1 159 46.5
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.4e-30 137.5 116 56.9
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.3e-27 129.8 132 50.8
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.6e-26 124.4 230 37.4
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 1.7e-22 112.8 185 37.3
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.9e-22 112.1 118 48.3
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 4.9e-22 111.3 96 60.4
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 4.1e-21 108.2 1270 21.3
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.4e-21 107.8 178 38.2
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 9.2e-21 107.1 180 37.8
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.1e-20 105.9 96 54.2
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.1e-20 105.9 96 54.2
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 7.8e-20 104.0 135 43.7
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.8e-17 95.5 127 41.7
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 6.2e-17 94.4 76 46.1
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 6.8e-16 90.9 147 35.4
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 9.9e-15 87.0 147 36.1
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 2.9e-14 85.5 93 47.3
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 6.4e-14 84.3 90 50.0
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 8.4e-14 84.0 282 27.7
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.9e-13 82.8 55 69.1
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.9e-13 82.8 73 56.2
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 3.2e-13 82.0 63 63.5
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 5.6e-10 71.2 81 46.9
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 7.3e-10 70.9 62 56.5
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.2e-09 70.1 58 56.9
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 2.8e-09 68.9 79 38.0
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 2.9e-06 58.9 44 56.8


User provided reference genes

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