Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.1e-102 375.6 250 100.0
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.2e-60 236.5 164 93.3
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 1.0e-57 227.6 165 90.9
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 6.3e-55 218.4 162 74.1
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.6e-47 193.7 165 70.9
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 1.7e-39 167.2 165 61.8
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 1.1e-38 164.5 166 74.1
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 2.4e-38 163.3 163 74.8
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 9.4e-35 151.4 173 54.9
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 3.3e-32 142.9 173 53.8
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 3.3e-32 142.9 173 53.8
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 7.4e-32 141.7 173 53.2
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.7e-31 140.6 173 52.6
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 2.2e-31 140.2 91 75.8
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 4.1e-30 136.0 168 48.8
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 5.3e-30 135.6 100 70.0
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 2.6e-29 133.3 162 49.4
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 2.2e-28 130.2 162 47.5
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 3.2e-27 126.3 161 46.6
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 3.2e-27 126.3 162 47.5
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 4.7e-26 122.5 122 55.7
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 8.0e-26 121.7 109 56.0
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 1.0e-25 121.3 163 42.9
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 1.4e-25 120.9 168 42.3
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 1.8e-25 120.6 163 44.2
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 2.3e-25 120.2 162 43.8
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 2.3e-25 120.2 107 53.3
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 4.0e-25 119.4 107 56.1
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 5.2e-25 119.0 162 45.1
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 5.2e-25 119.0 121 52.1
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 6.7e-25 118.6 109 54.1
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 6.7e-25 118.6 109 54.1
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 6.7e-25 118.6 109 54.1
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 6.7e-25 118.6 161 46.6
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 8.8e-25 118.2 107 51.4
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 8.8e-25 118.2 163 43.6
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 1.2e-24 117.9 175 42.9
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.0e-24 117.1 109 53.2
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 2.6e-24 116.7 104 55.8
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 3.3e-24 116.3 114 52.6
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 5.7e-24 115.5 104 54.8
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 5.7e-24 115.5 167 41.3
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 5.7e-24 115.5 162 42.6
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 5.7e-24 115.5 109 55.0
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 9.7e-24 114.8 107 52.3
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.7e-23 114.0 162 40.7
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 1.7e-23 114.0 155 44.5
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 2.2e-23 113.6 90 56.7
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.2e-23 113.6 162 44.4
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.2e-23 113.6 107 56.1
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 2.8e-23 113.2 114 49.1
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 3.7e-23 112.8 104 55.8
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 1.1e-22 111.3 112 49.1
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 1.4e-22 110.9 106 52.8
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 2.4e-22 110.2 116 51.7
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 2.4e-22 110.2 162 43.8
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 2.4e-22 110.2 99 51.5
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 3.1e-22 109.8 110 45.5
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 9.1e-22 108.2 162 42.0
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 9.1e-22 108.2 111 49.5
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 1.6e-21 107.5 94 60.6
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 4.5e-21 105.9 104 55.8
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 7.7e-21 105.1 152 42.1
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.0e-20 104.8 100 59.0
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.7e-20 104.0 152 45.4
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 1.7e-20 104.0 97 57.7
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.7e-20 104.0 104 54.8
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.9e-20 103.2 152 41.4
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 2.9e-20 103.2 157 42.0
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 3.8e-20 102.8 116 50.9
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 5.0e-20 102.4 153 43.1
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 6.5e-20 102.1 152 44.7
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 6.5e-20 102.1 107 50.5
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 6.5e-20 102.1 71 69.0
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 8.5e-20 101.7 152 45.4
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 8.5e-20 101.7 152 42.1
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 8.5e-20 101.7 111 51.4
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 8.5e-20 101.7 111 51.4
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 1.5e-19 100.9 115 47.0
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.5e-19 100.9 93 57.0
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 1.5e-19 100.9 111 51.4
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.2e-19 99.8 111 51.4
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 3.2e-19 99.8 151 42.4
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 4.2e-19 99.4 95 57.9
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 4.2e-19 99.4 152 42.1
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 5.5e-19 99.0 162 39.5
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.5e-19 99.0 111 50.5
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 7.2e-19 98.6 111 51.4
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 7.2e-19 98.6 103 55.3
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 7.2e-19 98.6 97 56.7
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.2e-18 97.8 155 40.6
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 1.2e-18 97.8 162 38.9
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 1.2e-18 97.8 98 54.1
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.2e-18 97.8 151 42.4
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 2.1e-18 97.1 151 43.0
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 3.6e-18 96.3 94 55.3
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 4.7e-18 95.9 105 49.5
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 8.0e-18 95.1 95 57.9
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 1.4e-17 94.4 155 41.3
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.4e-17 94.4 153 41.2
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 2.3e-17 93.6 106 49.1
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 3.0e-17 93.2 93 54.8
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 4.0e-17 92.8 158 39.9
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 5.2e-17 92.4 151 41.7
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 8.8e-17 91.7 152 40.1
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.6e-16 90.1 63 60.3
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.6e-16 90.1 63 60.3
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.1e-14 84.7 97 46.4
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 1.1e-14 84.7 139 38.8
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 1.4e-14 84.3 101 46.5
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 1.8e-14 84.0 59 66.1
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 9.1e-14 81.6 93 49.5
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 8.6e-12 75.1 61 57.4
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 6.1e-10 68.9 59 55.9
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 1.4e-09 67.8 101 38.6
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 4.0e-09 66.2 95 40.0
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 3.7e-07 59.7 72 43.1
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 2.4e-06 57.0 30 86.7


User provided reference genes

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