Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 2.8e-210 734.9 356 100.0
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 3.5e-200 701.4 356 95.2
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.7e-199 699.1 360 93.9
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 2.9e-199 698.4 356 94.4
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.1e-198 696.4 360 93.9
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 5.5e-198 694.1 360 93.9
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 5.5e-198 694.1 360 93.9
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 6.1e-197 690.6 360 93.3
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 1.8e-196 689.1 356 92.1
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 2.3e-196 688.7 360 93.3
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.0e-195 685.6 360 92.2
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 1.5e-190 669.5 363 89.5
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.2e-184 649.8 363 86.0
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.1e-172 610.1 361 81.4
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 4.0e-172 608.2 362 80.9
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 2.0e-171 605.9 364 81.0
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 3.4e-171 605.1 366 78.7
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 2.9e-170 602.1 364 80.5
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 3.7e-170 601.7 364 79.7
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 1.1e-169 600.1 356 80.1
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 9.2e-169 597.0 364 79.9
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.6e-168 596.3 364 78.6
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 2.1e-168 595.9 362 79.6
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 3.5e-168 595.1 369 78.0
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 4.6e-168 594.7 369 77.5
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 1.3e-167 593.2 362 79.0
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.3e-167 593.2 362 79.0
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 3.9e-167 591.7 353 80.7
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 5.1e-167 591.3 361 77.8
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 5.1e-167 591.3 360 77.2
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 8.6e-167 590.5 362 79.0
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 1.5e-166 589.7 360 77.5
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.9e-166 589.3 363 77.7
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.9e-166 589.3 367 77.7
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.9e-166 589.3 357 79.6
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 2.5e-166 589.0 353 80.2
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.5e-166 589.0 353 80.2
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.5e-166 589.0 363 77.7
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 4.3e-166 588.2 357 78.2
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 5.6e-166 587.8 359 77.7
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.6e-166 587.8 353 80.2
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.2e-165 586.6 351 80.3
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-165 586.6 357 79.6
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.6e-165 586.3 350 80.9
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 2.1e-165 585.9 356 78.7
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 2.1e-165 585.9 360 77.5
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 2.1e-165 585.9 356 79.5
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 3.6e-165 585.1 362 76.0
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 6.2e-165 584.3 353 80.2
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.1e-164 583.6 352 80.4
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 1.1e-164 583.6 362 77.3
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.4e-164 583.2 353 79.6
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 1.4e-164 583.2 352 80.1
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 1.4e-164 583.2 362 77.9
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.8e-164 582.8 349 80.2
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 6.8e-164 580.9 354 79.1
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 6.8e-164 580.9 388 74.2
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 6.8e-164 580.9 368 76.6
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 1.2e-163 580.1 357 77.0
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.5e-163 579.7 352 79.8
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 2.0e-163 579.3 351 79.8
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.6e-163 578.9 367 76.0
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 2.6e-163 578.9 352 78.7
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.4e-163 578.6 367 75.7
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.4e-163 578.6 367 75.7
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 5.8e-163 577.8 356 78.1
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 5.8e-163 577.8 356 78.4
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 5.8e-163 577.8 352 79.3
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 9.9e-163 577.0 352 79.3
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.3e-162 576.6 361 76.7
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.7e-162 576.2 363 77.1
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 8.3e-162 573.9 361 77.0
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.4e-161 573.2 352 77.8
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.4e-161 573.2 360 76.7
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.4e-161 572.4 352 79.5
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.4e-161 572.4 359 76.9
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 4.1e-161 571.6 360 76.4
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 7.1e-161 570.9 360 75.0
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 7.1e-161 570.9 352 77.6
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.6e-160 569.7 354 78.5
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 7.8e-160 567.4 353 76.5
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.0e-159 565.5 353 77.1
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.9e-159 565.1 349 77.9
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.1e-158 563.5 357 76.5
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 1.9e-158 562.8 358 75.1
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 3.3e-158 562.0 365 73.2
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.6e-157 558.5 381 71.9
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 8.1e-157 557.4 355 75.5
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 3.1e-156 555.4 365 72.3
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.2e-155 553.5 365 71.2
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 3.8e-154 548.5 366 71.9
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 6.4e-154 547.7 355 74.6
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.4e-153 546.6 445 63.4
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.4e-153 546.6 440 63.9
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 5.6e-150 534.6 359 71.9
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.3e-149 533.5 328 77.7
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 6.2e-149 531.2 415 65.8
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 2.9e-146 522.3 359 68.5
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.8e-146 521.9 357 69.2
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 3.8e-146 521.9 359 68.8
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 3.8e-146 521.9 374 67.4
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 5.4e-145 518.1 348 71.0
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 9.3e-145 517.3 456 58.6
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.0e-144 514.6 354 67.8
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 5.6e-142 508.1 360 67.8
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 2.8e-141 505.8 387 68.0
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 3.6e-141 505.4 360 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 6.2e-141 504.6 357 66.7
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 1.4e-140 503.4 350 66.3
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.8e-140 503.1 352 66.8
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 7.6e-139 497.7 358 64.2
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.1e-137 493.8 362 63.3
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 2.1e-136 489.6 273 85.7
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 1.5e-134 483.4 520 50.6
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 2.4e-124 449.5 254 83.5
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.0e-122 441.8 336 62.5
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 4.6e-120 435.3 344 64.5
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.9e-118 429.9 270 74.4
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 2.3e-111 406.4 273 71.4
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.0e-103 380.9 345 56.2
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.4e-103 380.6 344 54.7
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 3.7e-101 372.5 373 49.1
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.8e-100 370.2 302 59.3
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.0e-83 313.5 193 77.7
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 3.5e-83 312.8 223 65.9
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 9.4e-81 304.7 271 59.4
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 1.1e-76 291.2 164 85.4
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 5.9e-75 285.4 179 74.3
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.1e-73 281.2 162 83.3
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.9e-73 280.4 182 75.8
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 1.0e-71 274.6 177 73.4
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.5e-70 268.5 345 45.5
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 4.7e-56 222.6 175 60.0
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 3.0e-50 203.4 118 81.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.1e-43 180.6 106 78.3
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 2.1e-43 180.6 170 57.1
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 4.6e-35 152.9 105 74.3
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 6.6e-34 149.1 89 82.0
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.9e-26 123.2 151 47.7
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 1.3e-24 118.2 91 64.8
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 4.2e-20 103.2 57 84.2
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.8e-18 97.8 55 78.2
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 3.9e-18 96.7 77 62.3
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 9.6e-17 92.0 232 28.0
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 8.1e-16 89.0 62 62.9
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.2e-14 85.1 83 53.0
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 1.3e-13 81.6 72 63.9
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 3.2e-12 77.0 47 72.3
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 5.7e-09 66.2 74 50.0
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 2.6e-06 57.4 33 78.8
Haze_02858 Corylus avellana HOM05D000018 ORTHO05D003405 4.5e-06 56.6 287 24.4
Oeu000043.1 Olea europaea HOM05D000206 ORTHO05D000232 4.5e-06 56.6 197 25.4
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 7.6e-06 55.8 43 55.8


User provided reference genes

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