Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 4.5e-90 334.7 188 100.0
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 8.2e-84 313.9 189 95.2
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.1e-75 287.0 193 90.2
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.2e-73 279.3 189 82.5
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.1e-71 272.7 189 86.2
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 4.7e-71 271.6 189 81.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 6.8e-70 267.7 189 79.9
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 6.8e-70 267.7 189 79.9
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 6.8e-70 267.7 189 79.9
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 6.8e-70 267.7 189 78.3
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-69 265.8 189 78.3
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 5.7e-69 264.6 189 77.2
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 4.8e-68 261.5 189 76.2
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 6.3e-68 261.2 189 76.2
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 7.2e-64 247.7 189 74.1
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 3.0e-62 242.3 189 71.4
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 4.0e-62 241.9 189 79.4
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.5e-61 240.0 189 72.0
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 3.8e-57 225.3 179 71.5
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-54 216.9 164 73.8
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.0e-53 213.0 184 73.4
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 5.7e-53 211.5 172 76.7
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-52 209.9 172 76.2
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.1e-51 207.2 182 68.7
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.3e-49 200.3 191 64.4
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.5e-48 196.1 190 64.7
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 8.9e-46 187.6 195 53.8
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 8.3e-44 181.0 188 55.9
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 8.3e-44 181.0 190 54.7
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 4.1e-43 178.7 190 53.7
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 7.0e-43 177.9 197 55.8
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 9.2e-43 177.6 185 61.1
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.2e-42 177.2 192 56.2
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 2.0e-42 176.4 197 53.3
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 2.0e-42 176.4 200 52.5
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.5e-42 175.6 188 57.4
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.0e-41 174.1 186 54.8
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.0e-41 174.1 183 56.3
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.0e-41 174.1 190 52.6
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.3e-41 173.7 193 53.4
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.3e-41 172.9 190 52.6
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 8.6e-41 171.0 187 56.1
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 8.6e-41 171.0 194 51.5
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 9.5e-40 167.5 191 55.0
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.8e-38 163.3 197 50.8
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 2.3e-38 162.9 187 51.3
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.1e-38 162.5 202 51.5
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 5.2e-38 161.8 203 49.3
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.0e-37 159.8 197 53.8
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 4.4e-37 158.7 198 49.0
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.3e-36 157.1 198 49.0
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.9e-35 153.3 187 52.4
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.4e-35 152.9 194 51.0
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 9.2e-35 151.0 217 42.9
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 9.2e-35 151.0 186 51.6
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.2e-34 150.6 191 48.2
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.6e-34 150.2 189 52.4
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.5e-34 149.1 189 52.4
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 7.8e-34 147.9 176 55.7
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.0e-33 147.5 210 44.3
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.0e-33 147.5 198 48.5
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.7e-33 146.7 194 50.0
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 3.9e-33 145.6 208 45.7
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.6e-33 144.8 189 51.3
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 8.6e-33 144.4 197 48.2
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 8.6e-33 144.4 207 45.4
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.5e-32 143.7 207 46.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.9e-32 143.3 208 46.6
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 3.3e-32 142.5 193 47.7
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 9.5e-32 141.0 208 45.7
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.2e-31 140.6 208 45.2
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.6e-31 140.2 213 47.9
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.1e-31 139.8 191 42.9
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.1e-31 139.8 194 47.9
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.6e-31 139.0 183 49.7
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.6e-31 139.0 183 49.7
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 3.6e-31 139.0 199 48.7
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 8.1e-31 137.9 213 45.1
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 8.1e-31 137.9 215 42.8
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-30 137.5 183 49.2
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.4e-30 137.1 207 45.4
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 2.4e-30 136.3 213 42.3
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 2.4e-30 136.3 186 44.6
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 3.1e-30 136.0 213 43.2
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 4.0e-30 135.6 186 44.1
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 6.8e-30 134.8 204 44.6
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.9e-30 134.4 207 44.0
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.5e-29 133.7 211 43.6
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.4e-29 132.5 207 44.0
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.3e-28 130.6 205 42.9
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 2.2e-28 129.8 213 42.3
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 2.9e-28 129.4 211 42.2
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.9e-28 129.4 175 49.7
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 3.8e-28 129.0 211 41.2
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 6.4e-28 128.3 185 44.3
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 6.4e-28 128.3 197 45.2
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.1e-27 127.5 175 46.9
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.1e-27 127.5 227 39.2
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.4e-27 126.3 197 43.1
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.4e-27 125.2 196 44.4
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 7.1e-27 124.8 184 46.2
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 9.2e-27 124.4 222 41.9
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 9.2e-27 124.4 215 40.5
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.2e-26 124.0 213 41.3
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.7e-26 122.9 215 42.8
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.5e-26 122.5 211 40.8
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 3.5e-26 122.5 205 43.9
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 6.0e-26 121.7 197 40.6
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.3e-25 120.6 219 39.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.3e-24 115.5 199 38.2
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.2e-23 114.0 211 39.3
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.2e-23 114.0 107 57.9
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.8e-23 112.8 203 40.4
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.8e-23 112.8 164 46.3
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 3.6e-23 112.5 217 40.6
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.4e-22 110.5 191 40.3
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 4.0e-22 109.0 211 39.3
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 5.2e-22 108.6 202 40.1
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.2e-21 107.5 228 39.0
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 2.0e-21 106.7 217 43.8
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 2.6e-21 106.3 189 40.2
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 3.4e-21 105.9 196 37.2
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 4.4e-21 105.5 191 39.8
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 4.4e-21 105.5 191 40.3
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 4.4e-21 105.5 195 39.0
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 7.6e-21 104.8 246 34.1
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 9.9e-21 104.4 193 38.3
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.3e-20 104.0 200 39.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.3e-20 104.0 216 38.9
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-20 103.6 192 38.5
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-20 103.6 192 38.5
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.7e-20 103.6 192 38.5
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.2e-20 103.2 233 34.3
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.9e-20 102.8 195 39.5
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 6.4e-20 101.7 189 37.6
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.1e-19 100.9 187 41.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.4e-19 100.5 210 41.9
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 2.4e-19 99.8 187 40.6
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 7.1e-19 98.2 188 36.7
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.6e-18 97.1 207 36.7
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.6e-18 97.1 191 37.7
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.1e-18 96.7 204 35.8
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.5e-18 95.9 221 33.0
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.3e-17 94.0 190 38.4
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.7e-17 93.6 187 35.3
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.0e-17 92.8 195 44.1
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 5.1e-17 92.0 195 35.4
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 6.6e-17 91.7 189 38.1
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 6.6e-17 91.7 189 38.1
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 8.7e-17 91.3 102 52.9
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 2.5e-16 89.7 244 32.4
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.3e-16 89.4 188 35.6
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.3e-16 89.4 188 35.6
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 7.3e-16 88.2 189 37.6
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 9.6e-16 87.8 189 35.4
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.6e-15 87.0 199 39.7
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.1e-15 86.7 186 34.4
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.8e-15 86.3 110 49.1
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 8.1e-15 84.7 77 61.0
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 3.1e-14 82.8 223 37.7
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 2.0e-13 80.1 189 36.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 5.8e-13 78.6 177 37.3
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 6.4e-12 75.1 72 56.9
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 8.4e-12 74.7 120 42.5
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.2e-11 72.8 179 35.2
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.2e-10 70.9 202 36.1
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 2.7e-10 69.7 187 38.5
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 3.0e-09 66.2 72 56.9
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.5e-08 63.9 56 62.5
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.3e-07 60.8 99 42.4
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.4e-06 57.4 185 29.2
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.0e-06 55.8 179 31.3


User provided reference genes

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