Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 2.5e-69 265.4 138 100.0
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 1.2e-68 263.1 138 99.3
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 2.5e-66 255.4 138 95.7
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 2.5e-61 238.8 138 89.9
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 1.2e-60 236.5 138 85.5
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 1.2e-60 236.5 138 85.5
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 1.6e-60 236.1 138 84.8
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 1.4e-59 233.0 138 84.8
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 8.8e-59 230.3 138 81.9
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 8.8e-59 230.3 138 81.9
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 3.7e-57 224.9 138 80.4
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 7.0e-56 220.7 138 80.4
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 1.1e-45 186.8 138 67.4
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 4.7e-44 181.4 139 70.5
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 5.2e-43 177.9 119 80.7
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 2.6e-42 175.6 119 79.8
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 5.7e-42 174.5 119 79.0
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 1.7e-41 172.9 119 78.2
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 1.7e-41 172.9 119 78.2
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 7.8e-23 110.9 137 43.1
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 1.0e-22 110.5 139 44.6
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 1.0e-22 110.5 137 41.6
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 1.3e-22 110.2 136 43.4
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 6.6e-22 107.8 137 41.6
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.9e-21 106.3 137 40.1
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 4.3e-21 105.1 139 41.0
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 4.3e-21 105.1 137 41.6
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 5.6e-21 104.8 137 40.9
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 7.3e-21 104.4 138 43.5
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 9.5e-21 104.0 130 45.4
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 1.2e-20 103.6 150 38.7
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.2e-20 103.6 137 40.1
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 1.2e-20 103.6 127 44.9
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 2.1e-20 102.8 137 39.4
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 6.1e-20 101.3 137 39.4
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 6.1e-20 101.3 137 38.7
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 1.4e-19 100.1 138 42.0
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 1.8e-19 99.8 139 39.6
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 1.8e-19 99.8 142 40.1
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 2.3e-19 99.4 139 43.9
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 3.1e-19 99.0 138 42.8
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 4.0e-19 98.6 140 40.7
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 5.2e-19 98.2 139 39.6
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 6.8e-19 97.8 137 38.7
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 1.5e-18 96.7 134 41.0
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 2.6e-18 95.9 133 39.1
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 2.6e-18 95.9 127 44.9
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 3.4e-18 95.5 137 38.0
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 4.4e-18 95.1 137 41.6
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 4.4e-18 95.1 134 36.6
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 4.4e-18 95.1 149 38.3
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 5.8e-18 94.7 137 41.6
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 7.5e-18 94.4 141 36.2
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 9.8e-18 94.0 137 38.0
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 9.8e-18 94.0 136 41.2
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 2.2e-17 92.8 140 37.9
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 2.2e-17 92.8 134 42.5
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.9e-17 92.4 138 40.6
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 2.9e-17 92.4 138 36.2
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 3.7e-17 92.0 142 36.6
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 4.9e-17 91.7 137 38.0
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 8.3e-17 90.9 137 40.1
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 8.3e-17 90.9 138 39.1
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 8.3e-17 90.9 138 39.1
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.1e-16 90.5 141 38.3
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 1.1e-16 90.5 137 37.2
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 3.2e-16 89.0 137 35.0
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 3.2e-16 89.0 137 35.0
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 4.1e-16 88.6 134 38.8
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 5.4e-16 88.2 137 39.4
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 1.2e-15 87.0 137 36.5
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 1.2e-15 87.0 136 36.8
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 1.2e-15 87.0 117 38.5
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.6e-15 86.7 138 36.2
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 2.7e-15 85.9 138 37.0
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 2.7e-15 85.9 138 37.0
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.3e-14 83.6 121 38.0
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 1.7e-14 83.2 137 34.3
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 5.0e-14 81.6 120 38.3
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 5.0e-14 81.6 135 36.3
CANSAT25G0582 Cannabis sativa HOM05D005726 ORTHO05D001733 6.6e-14 81.3 142 35.9
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 2.5e-13 79.3 125 34.4
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 5.6e-13 78.2 141 36.2
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 9.5e-13 77.4 138 36.2
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 2.8e-12 75.9 135 36.3
Prupe.1G365100 Prunus persica HOM05D005726 ORTHO05D001733 1.4e-11 73.6 139 35.3
Lsat_1_v5_gn_2_9581 Lactuca sativa HOM05D005726 ORTHO05D001733 1.8e-11 73.2 136 36.8
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 6.8e-11 71.2 138 33.3
Sed0014046 Sechium edule HOM05D005726 ORTHO05D001733 6.8e-11 71.2 129 37.2
CsaV3_3G045890 Cucumis sativus L. HOM05D005726 ORTHO05D001733 1.2e-10 70.5 135 34.8
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 2.6e-10 69.3 110 40.0
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 5.8e-10 68.2 128 39.1
MELO3C003749.2 Cucumis melo HOM05D005726 ORTHO05D001733 7.5e-10 67.8 135 33.3
Migut.N03162 Erythranthe guttata HOM05D005726 ORTHO05D001733 2.9e-09 65.9 134 32.1
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 2.9e-09 65.9 110 38.2
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 3.7e-09 65.5 111 36.9
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 6.4e-09 64.7 111 36.9
Migut.C00838 Erythranthe guttata HOM05D005726 ORTHO05D001733 8.3e-09 64.3 119 32.8
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 8.3e-09 64.3 111 36.9
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 1.1e-08 63.9 123 35.0
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 3.2e-08 62.4 122 32.8
Solyc04g081460.2 Solanum lycopersicum HOM05D005726 ORTHO05D001733 7.1e-08 61.2 61 49.2
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.2e-07 60.5 110 35.5
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.2e-07 60.5 110 35.5
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.2e-07 60.5 110 35.5
Aa31LG5G5080 Aethionema arabicum HOM05D003064 ORTHO05D001733 2.7e-07 59.3 111 37.8
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 2.7e-07 59.3 140 32.1
ClCG02G004310 Citrullus lanatus HOM05D007714 ORTHO05D009659 2.7e-07 59.3 110 35.5
Medtr4g094472 Medicago truncatula HOM05D018548 ORTHO05D020752 2.7e-07 59.3 140 31.4
Lj4g0016221 Lotus japonicus HOM05D018548 ORTHO05D020752 3.5e-07 58.9 128 34.4
MELO3C014664.2 Cucumis melo HOM05D003064 ORTHO05D001733 4.6e-07 58.5 108 34.3
Peaxi162Scf00438g00833 Petunia axillaris HOM05D005726 ORTHO05D001733 6.0e-07 58.2 138 33.3
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 7.8e-07 57.8 107 34.6
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 7.8e-07 57.8 110 31.8
Peaxi162Scf00400g00087 Petunia axillaris HOM05D005726 ORTHO05D001733 7.8e-07 57.8 120 30.0
MBI05_g46324_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.0e-06 57.4 133 30.1
Glyma.12G024300 Glycine max HOM05D005726 ORTHO05D001733 1.3e-06 57.0 91 40.7
PGR042G3858 Punica granatum HOM05D005726 ORTHO05D001733 1.3e-06 57.0 146 36.3
ClCG02G023860 Citrullus lanatus HOM05D003064 ORTHO05D001733 1.7e-06 56.6 108 36.1
Sed0013832 Sechium edule HOM05D007714 ORTHO05D009659 1.7e-06 56.6 111 33.3
PGR102G0542 Punica granatum HOM05D003064 ORTHO05D001733 2.3e-06 56.2 107 31.8
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 3.0e-06 55.8 110 35.5
SalBow8G4445 Salvia bowleyana HOM05D005726 ORTHO05D001733 3.9e-06 55.5 135 30.4
TPR.G23812 Trifolium pratense HOM05D018548 ORTHO05D020752 3.9e-06 55.5 127 32.3
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 5.1e-06 55.1 110 32.7
Lsat_1_v5_gn_6_50860 Lactuca sativa HOM05D003064 ORTHO05D001733 5.1e-06 55.1 107 32.7
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 5.1e-06 55.1 109 33.0
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 5.1e-06 55.1 110 31.8
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 5.1e-06 55.1 123 30.1
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 6.6e-06 54.7 107 31.8
DCAR_006051 Daucus carota HOM05D005726 ORTHO05D001733 8.6e-06 54.3 118 31.4
Potri.009G024500 Populus trichocarpa HOM05D003064 ORTHO05D001733 8.6e-06 54.3 131 32.8
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 8.6e-06 54.3 121 29.8


User provided reference genes

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