Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 8.0e-252 873.2 427 100.0
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 6.8e-243 843.6 431 95.6
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 2.6e-234 815.1 424 94.8
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 1.0e-230 803.1 431 91.0
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 2.2e-225 785.4 420 91.2
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 4.3e-221 771.2 423 89.6
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.1e-216 756.5 423 88.2
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 1.4e-216 756.1 423 88.2
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 1.4e-216 756.1 423 88.2
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.9e-216 755.7 423 88.2
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.3e-214 749.6 445 83.6
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 4.3e-213 744.6 427 85.9
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 6.0e-191 671.0 421 77.7
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 6.2e-188 661.0 418 75.8
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 4.0e-187 658.3 418 75.1
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 9.9e-186 653.7 414 75.6
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 1.3e-185 653.3 410 77.3
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.7e-185 652.9 406 76.6
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 2.1e-183 646.0 398 77.9
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 2.7e-183 645.6 410 75.4
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 3.5e-183 645.2 426 74.4
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.7e-182 640.6 414 74.6
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.9e-181 639.4 385 78.7
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.5e-181 639.0 421 73.9
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 5.6e-181 637.9 385 78.4
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.1e-180 636.0 341 89.7
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.8e-180 635.6 409 75.1
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.1e-179 633.6 408 73.8
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 5.3e-179 631.3 408 73.3
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 9.0e-179 630.6 427 71.7
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.5e-178 629.8 408 73.3
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 5.8e-178 627.9 394 76.1
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.3e-177 626.7 421 72.7
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.2e-177 625.9 423 72.1
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 6.5e-177 624.4 405 74.1
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.9e-176 622.9 406 72.9
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 2.5e-176 622.5 424 71.7
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 2.5e-176 622.5 411 72.5
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.2e-176 622.1 426 71.6
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.2e-176 622.1 422 71.3
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 3.2e-176 622.1 415 72.8
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 3.5e-175 618.6 421 71.5
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 1.8e-174 616.3 411 73.0
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 3.0e-174 615.5 412 71.6
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 3.9e-174 615.1 405 73.1
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 4.3e-173 611.7 426 70.9
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 5.7e-173 611.3 385 75.3
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 9.7e-173 610.5 403 71.0
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 9.7e-173 610.5 401 73.1
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 1.3e-172 610.1 407 71.7
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.6e-172 609.8 403 72.7
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.6e-172 609.8 426 69.7
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 2.8e-172 609.0 425 70.1
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 6.3e-172 607.8 399 72.7
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 6.9e-171 604.4 400 72.8
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 2.0e-170 602.8 421 68.9
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.4e-170 602.1 417 69.5
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 5.9e-170 601.3 424 68.2
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.0e-169 600.5 398 71.9
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.0e-169 600.5 429 68.5
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.7e-169 599.7 435 68.7
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.2e-169 599.4 425 68.9
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 2.2e-169 599.4 394 73.1
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 3.8e-169 598.6 396 71.7
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 1.1e-168 597.0 410 71.0
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 7.9e-167 590.9 398 70.4
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.0e-166 590.5 405 70.9
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 3.0e-166 589.0 409 70.9
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 1.9e-165 586.3 401 70.6
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 3.3e-165 585.5 409 70.7
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 3.3e-165 585.5 417 68.8
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 7.4e-165 584.3 387 70.8
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 7.4e-165 584.3 428 67.1
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 9.7e-165 583.9 388 71.6
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 3.1e-163 578.9 411 66.7
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 4.1e-163 578.6 409 68.9
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 9.1e-163 577.4 409 69.7
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 1.2e-162 577.0 423 66.0
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.5e-162 576.6 409 69.7
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 2.0e-162 576.2 432 65.3
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 4.5e-162 575.1 385 69.6
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 1.3e-161 573.5 418 67.0
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.3e-161 573.5 398 68.1
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.3e-161 573.5 428 66.4
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 6.5e-161 571.2 379 71.5
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 9.4e-160 567.4 376 71.3
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 1.0e-158 563.9 391 69.3
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.8e-158 563.1 454 62.8
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 9.7e-157 557.4 428 63.8
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 8.2e-156 554.3 418 65.1
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.1e-155 553.9 385 68.8
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 2.0e-154 549.7 397 64.5
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.5e-152 542.7 338 75.7
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 7.4e-149 531.2 368 69.0
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 2.8e-148 529.3 377 68.7
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 7.0e-147 524.6 369 68.6
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 9.1e-147 524.2 419 62.5
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.3e-145 520.4 423 60.0
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.3e-142 509.6 421 61.3
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.7e-140 503.4 400 60.8
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 2.4e-139 499.6 380 62.6
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.8e-134 483.4 342 68.7
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 2.3e-134 483.0 409 57.9
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 4.8e-132 475.3 415 58.6
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 3.1e-131 472.6 343 64.7
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 7.0e-131 471.5 387 59.9
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 1.6e-130 470.3 452 55.3
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.7e-130 469.5 343 64.1
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 2.7e-130 469.5 388 58.5
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 1.3e-129 467.2 409 56.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.8e-129 465.7 327 65.4
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 3.3e-128 462.6 285 75.1
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 4.0e-126 455.7 303 71.3
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 5.6e-120 435.3 269 77.0
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 7.5e-109 398.3 285 70.9
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 2.2e-108 396.7 245 75.1
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 4.7e-103 379.0 307 57.3
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 6.2e-103 378.6 301 57.1
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 4.6e-98 362.5 407 46.4
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 2.5e-96 356.7 232 79.3
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 5.4e-91 339.0 175 90.9
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 5.4e-91 339.0 277 59.2
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 7.3e-88 328.6 204 72.5
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 7.1e-75 285.4 318 44.0
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.8e-73 280.8 191 66.0
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 4.9e-68 262.7 168 83.3
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 2.5e-67 260.4 246 51.2
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.6e-66 257.7 221 58.4
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.0e-65 255.0 195 60.0
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.9e-56 224.2 153 71.2
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.9e-43 181.0 115 67.0
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.8e-38 164.5 117 56.4
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 5.3e-38 162.9 291 38.1
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 9.1e-38 162.2 134 52.2
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 5.7e-32 142.9 186 42.5
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 2.8e-31 140.6 156 51.3
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.8e-30 137.9 114 57.9
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 7.0e-30 136.0 412 26.7
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 2.6e-24 117.5 296 30.4
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 1.6e-21 108.2 80 66.2
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 5.5e-19 99.8 63 68.3
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.1e-14 85.5 58 69.0
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 2.7e-13 80.9 51 68.6
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 8.6e-12 75.9 89 50.6
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 8.6e-12 75.9 89 50.6
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.0e-09 67.4 54 59.3


User provided reference genes

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