Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 1.5e-101 372.9 191 100.0
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 2.5e-96 355.5 189 94.7
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 1.1e-91 340.1 189 92.6
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 6.0e-90 334.3 188 90.4
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 9.6e-80 300.4 189 82.0
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 1.2e-77 293.5 189 82.0
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 2.6e-77 292.4 191 83.2
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 3.4e-77 292.0 190 82.6
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 3.4e-77 292.0 190 82.6
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 9.9e-77 290.4 190 82.1
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 6.0e-74 281.2 189 81.5
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 6.0e-74 281.2 189 81.5
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 7.9e-50 201.1 128 80.5
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 8.2e-47 191.0 172 60.5
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 2.1e-42 176.4 185 53.0
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 2.7e-42 176.0 193 52.8
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 3.6e-42 175.6 185 53.0
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 2.3e-41 172.9 196 51.0
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 1.5e-40 170.2 192 51.0
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 1.5e-40 170.2 192 51.6
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 9.7e-40 167.5 180 52.2
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 1.3e-39 167.2 175 51.4
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 2.2e-39 166.4 193 50.3
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 1.1e-38 164.1 193 49.2
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 1.1e-38 164.1 193 49.2
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 3.1e-38 162.5 195 49.7
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 5.3e-38 161.8 196 48.5
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 5.3e-38 161.8 187 49.7
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 6.9e-38 161.4 192 49.5
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 2.0e-37 159.8 187 48.7
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 1.0e-36 157.5 189 47.6
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 1.0e-36 157.5 189 48.1
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 1.3e-36 157.1 196 45.4
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 1.3e-36 157.1 193 48.2
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.3e-36 157.1 192 44.8
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 1.3e-36 157.1 188 49.5
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 1.3e-36 157.1 197 46.2
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 1.7e-36 156.8 184 50.5
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 3.8e-36 155.6 193 47.2
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 3.8e-36 155.6 198 46.5
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 5.0e-36 155.2 202 47.5
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 6.5e-36 154.8 196 46.4
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 8.5e-36 154.5 187 48.1
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 1.4e-35 153.7 190 45.8
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 2.5e-35 152.9 191 48.7
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 3.2e-35 152.5 182 44.0
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 5.5e-35 151.8 193 44.0
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 5.5e-35 151.8 190 45.3
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 1.2e-34 150.6 193 47.2
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 1.6e-34 150.2 200 45.0
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 1.6e-34 150.2 197 45.7
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 2.7e-34 149.4 187 47.6
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 4.6e-34 148.7 192 43.2
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 6.1e-34 148.3 188 45.2
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 1.0e-33 147.5 198 44.9
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 1.8e-33 146.7 187 42.8
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 6.7e-33 144.8 190 45.8
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 1.1e-32 144.1 190 48.4
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 1.1e-32 144.1 197 43.7
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 1.5e-32 143.7 180 48.9
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 1.5e-32 143.7 188 44.1
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 1.5e-32 143.7 185 43.8
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 1.5e-32 143.7 191 44.0
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 2.0e-32 143.3 149 50.3
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 2.6e-32 142.9 183 48.6
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 3.3e-32 142.5 183 48.6
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 4.4e-32 142.1 197 45.2
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 5.7e-32 141.7 192 46.4
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 1.3e-31 140.6 167 46.1
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.7e-31 140.2 162 48.8
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 1.1e-30 137.5 185 46.5
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 1.1e-30 137.5 152 44.7
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 5.3e-30 135.2 190 43.7
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 6.9e-30 134.8 154 44.8
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 9.1e-30 134.4 188 46.8
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 1.7e-28 130.2 193 43.5
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 1.9e-27 126.7 183 42.6
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 7.9e-26 121.3 121 52.1
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 1.4e-25 120.6 187 40.1
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 1.8e-25 120.2 210 39.0
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 1.1e-24 117.5 186 39.2
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 2.5e-19 99.8 197 37.1
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 3.3e-16 89.4 193 36.8
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 1.2e-10 70.9 176 34.7
SMO111G0080 Selaginella moellendorffii HOM05D001508 ORTHO05D001381 8.8e-09 64.7 149 30.9
AUR62036507 Chenopodium quinoa HOM05D000013 ORTHO05D000011 2.6e-08 63.2 61 47.5
Glyma.03G147800 Glycine max HOM05D000180 ORTHO05D000099 3.4e-08 62.8 120 33.3
CSS0008829 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 7.5e-08 61.6 102 37.3
CSS0046463 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 7.5e-08 61.6 102 37.3
SEGI_32439 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 9.8e-08 61.2 104 32.7
Phvul.001G145900 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 1.7e-07 60.5 117 32.5
Phvul.001G145800 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 2.2e-07 60.1 117 30.8
arahy.Tifrunner.gnm1.ann1.FTV255 Arachis hypogaea HOM05D000180 ORTHO05D000099 2.8e-07 59.7 101 38.6
arahy.Tifrunner.gnm1.ann1.G07C2M Arachis hypogaea HOM05D000180 ORTHO05D000099 2.8e-07 59.7 138 31.2
arahy.Tifrunner.gnm1.ann1.U3CTV6 Arachis hypogaea HOM05D000180 ORTHO05D000099 2.8e-07 59.7 123 34.1
Glyma.19G151200 Glycine max HOM05D000180 ORTHO05D000099 3.7e-07 59.3 125 35.2
Mapoly0099s0036 Marchantia polymorpha HOM05D000180 ORTHO05D010079 3.7e-07 59.3 87 34.5
Phvul.001G145600 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 3.7e-07 59.3 125 35.2
THA.LOC104819119 Tarenaya hassleriana HOM05D000180 ORTHO05D000099 3.7e-07 59.3 121 35.5
VMungo1383G1447 Vigna mungo HOM05D000180 ORTHO05D000099 3.7e-07 59.3 107 33.6
Psat7g248720 Pisum sativum HOM05D000180 ORTHO05D000099 6.3e-07 58.5 83 37.3
Sc16g0012030 Simmondsia chinensis HOM05D000180 ORTHO05D000099 6.3e-07 58.5 127 33.1
VMungo1383G3735 Vigna mungo HOM05D000180 ORTHO05D000099 6.3e-07 58.5 125 34.4
Glyma.03G147700 Glycine max HOM05D000180 ORTHO05D000099 8.3e-07 58.2 125 35.2
Glyma.19G151100 Glycine max HOM05D000180 ORTHO05D000099 8.3e-07 58.2 125 34.4
Phvul.001G145700 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 1.4e-06 57.4 118 30.5
VMungo1383G1508 Vigna mungo HOM05D000180 ORTHO05D000099 1.4e-06 57.4 107 32.7
Lj9C645T24 Lonicera japonica HOM05D000180 ORTHO05D000099 3.1e-06 56.2 121 32.2
ATR0810G295 Amborella trichopoda HOM05D000180 ORTHO05D000099 4.1e-06 55.8 101 30.7
MSTRG.18525 Avicennia marina HOM05D000180 ORTHO05D000099 4.1e-06 55.8 87 37.9
CiPaw.13G010600 Carya illinoinensis HOM05D000180 ORTHO05D000099 4.1e-06 55.8 121 34.7
Gohir.A13G012800 Gossypium hirsutum HOM05D000180 ORTHO05D000099 4.1e-06 55.8 127 32.3
Medtr7g093830 Medicago truncatula HOM05D000180 ORTHO05D000099 4.1e-06 55.8 125 34.4
QL07p024903 Quercus lobata HOM05D000180 ORTHO05D000099 4.1e-06 55.8 101 34.7
MD02G1295700 Malus domestica HOM05D000180 ORTHO05D000099 5.4e-06 55.5 118 33.9
Medtr7g093820 Medicago truncatula HOM05D000180 ORTHO05D000099 5.4e-06 55.5 125 34.4
SalBow6G5590 Salvia bowleyana HOM05D000180 ORTHO05D000099 5.4e-06 55.5 79 40.5
ATR0003G033 Amborella trichopoda HOM05D000180 ORTHO05D000099 7.0e-06 55.1 119 36.1
ATR0810G102 Amborella trichopoda HOM05D000180 ORTHO05D000099 7.0e-06 55.1 103 31.1
CDE07G1183 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 7.0e-06 55.1 99 38.4
Ca_03578_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 7.0e-06 55.1 107 33.6
Ciclev10016848m.g Citrus clementina HOM05D000180 ORTHO05D000099 7.0e-06 55.1 92 35.9
Gohir.D04G090800 Gossypium hirsutum HOM05D000180 ORTHO05D000099 7.0e-06 55.1 96 35.4
Lj9C645T25 Lonicera japonica HOM05D000180 ORTHO05D000099 7.0e-06 55.1 116 33.6
MBI09_g32117_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 7.0e-06 55.1 101 32.7
MBI09_g39819_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 7.0e-06 55.1 101 32.7
Medtr7g093850 Medicago truncatula HOM05D000180 ORTHO05D000099 7.0e-06 55.1 125 35.2
Solyc10g055230.1 Solanum lycopersicum HOM05D000180 ORTHO05D000099 7.0e-06 55.1 100 37.0
Aqoxy2G00295 Aquilegia oxysepala HOM05D000180 ORTHO05D000099 9.1e-06 54.7 100 32.0
Ca_08545_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 9.1e-06 54.7 125 34.4
Thhalv10008857m.g Eutrema salsugineum HOM05D000180 ORTHO05D000099 9.1e-06 54.7 105 34.3
Os11g0179700 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 9.1e-06 54.7 99 34.3
PGR004G1159 Punica granatum HOM05D000180 ORTHO05D000099 9.1e-06 54.7 97 34.0


User provided reference genes

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