Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 0.0e+00 1582.8 836 100.0
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 0.0e+00 1226.1 845 82.1
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 0.0e+00 1187.6 838 79.4
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 0.0e+00 1076.2 840 72.3
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 7.4e-310 1067.0 869 71.9
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 3.1e-300 1035.0 869 69.7
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 1.5e-283 979.5 869 68.8
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 3.8e-282 974.9 870 68.7
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 7.2e-281 970.7 868 68.0
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 9.7e-278 960.3 868 67.4
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 1.3e-274 949.9 875 66.3
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 1.2e-267 926.8 870 65.6
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 1.3e-186 657.5 902 49.4
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 6.3e-184 648.7 1050 44.6
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 9.6e-100 369.0 1091 31.8
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 7.6e-97 359.4 1021 32.3
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 2.2e-96 357.8 883 35.4
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 8.4e-96 355.9 1095 30.4
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 1.1e-95 355.5 1097 30.4
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 1.9e-92 344.7 1087 31.7
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 3.3e-92 344.0 1096 30.7
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.3e-91 342.0 1088 30.9
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 1.4e-90 338.6 1089 30.6
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.8e-90 338.2 1084 30.5
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 4.0e-90 337.0 1084 30.5
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 4.0e-90 337.0 1101 29.4
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 7.6e-89 332.8 1090 30.5
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 9.9e-89 332.4 1089 30.1
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 1.9e-87 328.2 967 32.6
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 1.2e-86 325.5 1029 31.9
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 2.1e-86 324.7 1088 30.0
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 6.7e-85 319.7 964 31.3
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 3.7e-83 313.9 1079 29.6
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 6.2e-83 313.2 1030 30.9
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.1e-82 312.4 1071 30.3
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 1.8e-82 311.6 978 30.7
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.4e-82 311.2 1091 30.3
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 9.0e-82 309.3 962 30.4
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.0e-81 308.1 964 31.1
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 9.3e-79 299.3 1044 28.9
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 2.1e-78 298.1 1090 30.3
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 7.9e-78 296.2 983 29.3
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 2.3e-77 294.7 1054 30.0
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 3.3e-76 290.8 1062 28.9
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 1.6e-75 288.5 1043 29.8
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 3.7e-75 287.3 1013 29.3
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 8.2e-75 286.2 963 31.4
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.4e-74 285.4 1002 29.7
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 6.9e-74 283.1 1017 29.6
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 9.0e-74 282.7 1025 29.7
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 3.4e-73 280.8 1063 29.8
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 2.2e-72 278.1 1005 28.3
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.9e-72 277.7 1084 29.2
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 1.1e-71 275.8 1044 29.1
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.9e-71 275.0 913 31.0
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 6.1e-70 270.0 1079 28.5
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 1.3e-69 268.9 1047 28.1
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 2.3e-69 268.1 1022 29.5
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 3.0e-69 267.7 930 29.1
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 3.9e-69 267.3 1047 27.8
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 5.1e-69 266.9 1076 29.2
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.1e-68 265.8 1018 29.7
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.6e-67 261.9 1015 29.3
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 4.8e-67 260.4 1024 29.5
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 8.2e-67 259.6 1032 27.7
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 9.0e-66 256.1 1086 26.2
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 9.0e-66 256.1 1107 28.0
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 1.5e-65 255.4 1073 26.6
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 2.0e-65 255.0 1090 26.2
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 4.5e-65 253.8 1085 25.6
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 2.2e-64 251.5 1070 27.5
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 2.9e-64 251.1 938 31.4
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 5.0e-64 250.4 902 29.0
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 9.4e-63 246.1 1019 27.2
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 1.6e-62 245.4 1070 26.0
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 6.1e-62 243.4 1071 26.8
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.4e-61 242.3 901 28.7
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 1.8e-61 241.9 1081 28.7
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 4.4e-60 237.3 923 29.9
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 2.0e-57 228.4 882 27.4
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 4.5e-57 227.3 1044 26.7
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 8.5e-56 223.0 1055 26.2
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 4.2e-55 220.7 966 26.7
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 1.4e-53 215.7 1076 26.0
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.8e-53 215.3 1052 25.6
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 3.0e-53 214.5 1005 25.6
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 6.7e-53 213.4 1013 26.0
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 1.1e-52 212.6 923 27.0
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.0e-52 211.8 925 27.7
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 2.2e-51 208.4 911 26.3
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 6.3e-51 206.8 1020 26.6
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 1.1e-50 206.1 828 26.7
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 1.8e-50 205.3 811 30.3
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 5.9e-49 200.3 895 29.1
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 3.2e-47 194.5 403 37.7
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.6e-46 192.2 678 31.3
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 4.7e-46 190.7 647 31.5
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 1.0e-45 189.5 206 49.5
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 6.5e-40 170.2 1041 24.3
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 6.1e-38 163.7 212 42.5
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.7e-35 155.6 474 31.4
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 8.3e-35 153.3 543 30.2
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 9.1e-34 149.8 340 38.5
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 7.2e-31 140.2 120 55.8
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 1.0e-29 136.3 531 29.2
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 2.5e-23 115.2 991 22.8
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 1.2e-22 112.8 611 24.9
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 3.0e-21 108.2 368 29.3
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 8.3e-19 100.1 958 22.1
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 2.4e-18 98.6 375 29.9
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 2.3e-16 92.0 792 22.3
C04p25240 Brassica napus HOM05D006788 ORTHO05D008265 7.3e-15 87.0 139 39.6
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 1.6e-14 85.9 173 32.4
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.7e-14 84.3 226 29.2
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 8.0e-14 83.6 968 20.6
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.8e-13 82.4 814 22.6
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 1.8e-13 82.4 828 22.6
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.1e-13 81.6 837 22.1
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 4.0e-13 81.3 181 28.7
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 5.2e-13 80.9 823 21.7
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 5.2e-13 80.9 728 22.1
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 5.2e-13 80.9 182 31.3
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.0e-12 79.0 790 22.5
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.4e-12 78.2 740 22.2
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 4.4e-12 77.8 197 24.9
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 4.4e-12 77.8 170 30.6
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 9.8e-12 76.6 798 21.9
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 1.3e-11 76.3 167 28.7
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 2.2e-11 75.5 822 21.7
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.2e-11 75.5 177 29.9
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 1.1e-10 73.2 768 21.1
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.9e-10 72.4 165 30.3
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.2e-09 69.7 798 22.9
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 2.0e-09 68.9 785 22.0
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 4.6e-09 67.8 589 23.8
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 7.8e-09 67.0 171 28.7
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 7.8e-09 67.0 783 20.8
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 1.3e-08 66.2 832 22.2
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.3e-08 65.5 222 31.5
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 3.0e-08 65.1 829 21.4
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 6.6e-08 63.9 783 21.2
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 1.1e-07 63.2 588 23.1
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.5e-07 62.8 193 26.4
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 3.3e-07 61.6 814 21.1
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 3.3e-07 61.6 183 26.8
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 4.3e-07 61.2 201 28.4
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 4.3e-07 61.2 165 27.9
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 5.6e-07 60.8 822 22.0
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 1.2e-06 59.7 462 22.3
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 1.2e-06 59.7 855 19.5
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-06 59.7 864 19.4
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.2e-06 59.7 589 22.6
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 2.8e-06 58.5 818 22.0
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.8e-06 58.5 832 19.7
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 3.6e-06 58.2 802 21.7
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 8.1e-06 57.0 607 21.9


User provided reference genes

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