Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 2.6e-116 422.2 228 100.0
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 8.7e-104 380.6 230 90.9
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 5.3e-101 371.3 229 86.5
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 2.0e-100 369.4 231 85.7
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 2.3e-88 329.3 229 78.6
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 4.3e-87 325.1 229 78.6
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 2.8e-86 322.4 229 78.6
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 2.4e-85 319.3 228 78.1
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 5.3e-85 318.2 229 76.9
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 9.0e-85 317.4 229 75.1
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 1.2e-84 317.0 228 77.2
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 1.2e-84 317.0 229 77.7
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 4.9e-83 311.6 229 73.8
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 1.8e-77 293.1 234 70.5
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 5.1e-64 248.4 222 62.6
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 1.0e-59 234.2 193 65.8
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 2.9e-59 232.6 222 59.5
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 2.9e-59 232.6 196 63.8
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 3.8e-59 232.3 194 63.9
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 1.9e-58 229.9 202 61.9
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 1.9e-58 229.9 202 59.9
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 3.2e-58 229.2 194 63.9
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 5.5e-58 228.4 196 62.2
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 5.5e-58 228.4 193 62.2
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 9.4e-58 227.6 193 64.2
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 1.2e-57 227.3 196 61.7
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 1.2e-57 227.3 208 61.5
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 2.1e-57 226.5 191 63.4
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 2.1e-57 226.5 200 59.0
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 2.7e-57 226.1 194 61.9
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 2.7e-57 226.1 196 59.7
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 3.6e-57 225.7 206 60.2
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 4.7e-57 225.3 204 60.8
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 1.0e-56 224.2 191 61.8
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 1.0e-56 224.2 192 62.0
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 1.0e-56 224.2 194 62.9
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 1.8e-56 223.4 198 59.6
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 1.8e-56 223.4 210 60.0
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 2.3e-56 223.0 202 57.4
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 3.9e-56 222.2 193 63.2
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 6.7e-56 221.5 232 55.6
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.1e-55 220.7 195 60.0
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.6e-55 219.5 196 61.7
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 2.6e-55 219.5 203 58.6
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 3.3e-55 219.2 196 60.2
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 4.4e-55 218.8 196 60.7
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 5.7e-55 218.4 203 61.1
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 5.7e-55 218.4 226 53.5
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 1.3e-54 217.2 208 57.2
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 1.3e-54 217.2 191 61.8
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.7e-54 216.9 226 52.7
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 2.2e-54 216.5 192 60.9
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 2.8e-54 216.1 226 53.1
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 3.7e-54 215.7 230 54.3
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 8.2e-54 214.5 193 58.0
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 1.1e-53 214.2 206 56.3
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 1.8e-53 213.4 194 59.8
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 2.4e-53 213.0 205 58.5
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 2.4e-53 213.0 191 59.2
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 1.2e-52 210.7 185 62.7
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 2.0e-52 209.9 207 57.5
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 2.6e-52 209.5 189 59.8
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 1.7e-51 206.8 196 57.1
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 2.2e-51 206.5 196 57.1
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 2.9e-51 206.1 188 57.4
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 2.9e-51 206.1 193 56.5
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 5.0e-51 205.3 163 61.3
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 1.1e-50 204.1 196 56.1
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 3.2e-50 202.6 222 52.7
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 3.2e-50 202.6 195 55.9
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 5.5e-50 201.8 203 55.2
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 5.5e-50 201.8 201 55.7
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 1.2e-49 200.7 182 58.8
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 2.0e-47 193.4 264 47.7
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 7.5e-47 191.4 166 63.3
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 4.8e-46 188.7 166 62.7
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 1.4e-45 187.2 164 62.2
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 2.4e-45 186.4 169 62.7
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 7.0e-45 184.9 207 50.7
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 1.2e-44 184.1 165 57.6
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 1.7e-43 180.3 199 52.3
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.7e-43 180.3 183 53.0
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 2.9e-43 179.5 183 52.5
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 2.7e-41 172.9 199 50.3
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 3.6e-41 172.6 174 55.2
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.4e-40 170.6 225 44.0
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 2.6e-39 166.4 150 61.3
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 3.4e-39 166.0 191 48.7
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 1.8e-37 160.2 132 61.4
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.7e-35 153.7 119 63.0
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 2.3e-35 153.3 138 59.4
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 1.9e-34 150.2 191 47.1
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 3.3e-34 149.4 119 62.2
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 5.5e-34 148.7 169 47.3
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 1.8e-32 143.7 185 44.9
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 3.2e-29 132.9 137 52.6
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 5.9e-28 128.6 133 51.9
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 1.0e-24 117.9 103 57.3
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.6e-23 113.2 89 62.9
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 7.0e-21 105.1 80 63.8
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 3.5e-20 102.8 148 43.2
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 5.0e-19 99.0 264 30.7
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 5.6e-18 95.5 73 60.3
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 1.2e-15 87.8 192 35.4
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 1.5e-10 70.9 89 50.6


User provided reference genes

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