Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G18270 Arabidopsis lyrata HOM05D004665 ORTHO05D021400 1.1e-69 266.5 133 100.0
BcaC03g17377 Brassica carinata HOM05D004665 ORTHO05D006264 2.0e-39 166.0 82 96.3
BolC2t11394H Brassica oleracea HOM05D004665 ORTHO05D006264 2.0e-39 166.0 82 96.3
Carub.0005s0467 Capsella rubella HOM05D004665 ORTHO05D006264 7.4e-39 164.1 79 97.5
BcaC06g31051 Brassica carinata HOM05D004665 ORTHO05D006264 1.7e-38 162.9 79 97.5
A06p41830 Brassica napus HOM05D004665 ORTHO05D006264 1.7e-38 162.9 79 97.5
C07p35690 Brassica napus HOM05D004665 ORTHO05D006264 1.7e-38 162.9 79 97.5
BolC7t44090H Brassica oleracea HOM05D004665 ORTHO05D006264 1.7e-38 162.9 79 97.5
BraA06t27102Z Brassica rapa HOM05D004665 ORTHO05D006264 1.7e-38 162.9 79 97.5
Thhalv10004224m.g Eutrema salsugineum HOM05D004665 ORTHO05D006264 1.7e-38 162.9 79 97.5
Sp2g15790 Schrenkiella parvula HOM05D004665 ORTHO05D006264 2.8e-38 162.2 79 97.5
Aa31LG2G5890 Aethionema arabicum HOM05D004665 ORTHO05D006264 4.8e-38 161.4 79 96.2
AL5G15510 Arabidopsis lyrata HOM05D004665 ORTHO05D006264 8.2e-38 160.6 79 98.7
A02p34660 Brassica napus HOM05D004665 ORTHO05D006264 8.2e-38 160.6 80 97.5
BraA02t08474Z Brassica rapa HOM05D004665 ORTHO05D006264 1.1e-37 160.2 79 96.2
BcaB07g30223 Brassica carinata HOM05D004665 ORTHO05D006264 3.1e-37 158.7 80 96.2
C02p53220 Brassica napus HOM05D004665 ORTHO05D006264 4.1e-37 158.3 80 96.2
AT3G26670 Arabidopsis thaliana HOM05D004665 ORTHO05D006264 9.1e-37 157.1 79 97.5
THA.LOC104824001 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 1.6e-36 156.4 79 91.1
CARHR147680 Cardamine hirsuta HOM05D004665 ORTHO05D006264 3.5e-36 155.2 79 96.2
THA.LOC104805296 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 1.7e-35 152.9 79 89.9
PGR142G3265 Punica granatum HOM05D004665 ORTHO05D006264 4.2e-34 148.3 81 85.2
QL02p068558 Quercus lobata HOM05D004665 ORTHO05D006264 1.2e-33 146.7 80 85.0
MBI11_g30566_MAGBIO Magnolia biondii HOM05D004665 ORTHO05D006264 3.6e-33 145.2 81 86.4
Eucgr.I01571 Eucalyptus grandis HOM05D004665 ORTHO05D006264 8.0e-33 144.1 81 84.0
Thecc.04G051300 Theobroma cacao HOM05D004665 ORTHO05D006264 8.0e-33 144.1 79 86.1
Potri.014G139700 Populus trichocarpa HOM05D004665 ORTHO05D006264 1.0e-32 143.7 81 84.0
COL.COLO4_13402 Corchorus olitorius HOM05D004665 ORTHO05D006264 1.4e-32 143.3 81 82.7
MD17G1004100 Malus domestica HOM05D004665 ORTHO05D006264 4.0e-32 141.7 81 79.0
Nn3g16211 Nelumbo nucifera HOM05D004665 ORTHO05D006264 4.0e-32 141.7 81 82.7
Prupe.3G315100 Prunus persica HOM05D004665 ORTHO05D006264 5.2e-32 141.4 81 80.2
Sabra14G0105400 Salix brachista HOM05D004665 ORTHO05D006264 5.2e-32 141.4 81 82.7
Gohir.A11G061900 Gossypium hirsutum HOM05D004665 ORTHO05D006264 6.8e-32 141.0 81 80.2
Gohir.D11G065800 Gossypium hirsutum HOM05D004665 ORTHO05D006264 6.8e-32 141.0 81 80.2
Gohir.D11G065866 Gossypium hirsutum HOM05D004665 ORTHO05D006264 6.8e-32 141.0 81 80.2
Gorai.007G071300 Gossypium raimondii HOM05D004665 ORTHO05D006264 6.8e-32 141.0 81 80.2
CiPaw.04G000200 Carya illinoinensis HOM05D004665 ORTHO05D006264 1.5e-31 139.8 81 80.2
PSO478G3167 Papaver somniferum HOM05D004665 ORTHO05D006264 1.5e-31 139.8 79 78.5
RcHm_v2.0_Chr2g0176711 Rosa chinensis HOM05D004665 ORTHO05D006264 2.0e-31 139.4 81 80.2
Cfa007139 Carpinus fangiana HOM05D004665 ORTHO05D006264 3.4e-31 138.7 81 79.0
MD09G1001000 Malus domestica HOM05D004665 ORTHO05D006264 4.4e-31 138.3 79 75.9
TAR622G0174 Trochodendron aralioides HOM05D004665 ORTHO05D006264 5.7e-31 137.9 81 80.2
FAN05G2324 Fragaria x ananassa HOM05D004665 ORTHO05D006264 9.7e-31 137.1 81 77.8
arahy.Tifrunner.gnm1.ann1.3E1BT5 Arachis hypogaea HOM05D004665 ORTHO05D006264 1.7e-30 136.3 81 76.5
ClCG05G012480 Citrullus lanatus HOM05D004665 ORTHO05D006264 1.7e-30 136.3 81 77.8
FvH4_6g54450 Fragaria vesca HOM05D004665 ORTHO05D006264 2.2e-30 136.0 81 76.5
FAN02G3871 Fragaria x ananassa HOM05D004665 ORTHO05D006264 2.2e-30 136.0 81 76.5
Sed0011932 Sechium edule HOM05D004665 ORTHO05D006264 2.2e-30 136.0 81 79.0
Lj2g0020206 Lotus japonicus HOM05D004665 ORTHO05D006264 2.8e-30 135.6 80 78.8
PSO017G6847 Papaver somniferum HOM05D004665 ORTHO05D006264 2.8e-30 135.6 79 75.9
TWI60G0175 Tripterygium wilfordii HOM05D004665 ORTHO05D006264 2.8e-30 135.6 81 76.5
Ca_04509_v3 Cicer arietinum L. HOM05D004665 ORTHO05D006264 4.8e-30 134.8 80 78.8
CsaV3_3G020050 Cucumis sativus L. HOM05D004665 ORTHO05D006264 4.8e-30 134.8 81 76.5
Glyma.02G068000 Glycine max HOM05D004665 ORTHO05D006264 4.8e-30 134.8 80 77.5
Glyma.16G149500 Glycine max HOM05D004665 ORTHO05D006264 4.8e-30 134.8 80 77.5
Dinv33260 Davidia involucrata HOM05D004665 ORTHO05D006264 6.3e-30 134.4 81 79.0
Medtr6g033100 Medicago truncatula HOM05D004665 ORTHO05D006264 6.3e-30 134.4 80 78.8
Duzib147G0914 Durio zibethinus HOM05D004665 ORTHO05D006264 8.3e-30 134.0 81 79.0
Migut.F00002 Erythranthe guttata HOM05D004665 ORTHO05D006264 1.1e-29 133.7 81 76.5
CSS0012528 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 1.4e-29 133.3 81 77.8
CSS0013787 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 1.4e-29 133.3 81 77.8
FAN09G0696 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.4e-29 133.3 81 76.5
FAN14G5400 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.4e-29 133.3 81 76.5
TPR.G6109 Trifolium pratense HOM05D004665 ORTHO05D006264 1.8e-29 132.9 80 77.5
vmacro18402 Vaccinium macrocarpon HOM05D004665 ORTHO05D006264 2.4e-29 132.5 81 75.3
GSVIVG01032952001 Vitis vinifera HOM05D004665 ORTHO05D006264 2.4e-29 132.5 81 77.8
Psat1g014640 Pisum sativum HOM05D004665 ORTHO05D006264 3.1e-29 132.1 80 78.8
VMungo0464G1810 Vigna mungo HOM05D004665 ORTHO05D006264 3.1e-29 132.1 80 76.2
Actinidia19542 Actinidia chinensis HOM05D004665 ORTHO05D006264 4.1e-29 131.7 81 75.3
Hma1.2p1_0421F.1_g149890 Hydrangea macrophylla HOM05D004665 ORTHO05D006264 4.1e-29 131.7 81 75.3
Sc16g0004200 Simmondsia chinensis HOM05D004665 ORTHO05D006264 7.0e-29 131.0 80 75.0
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.2e-28 130.2 80 77.5
Ciclev10015243m.g Citrus clementina HOM05D004665 ORTHO05D006264 1.2e-28 130.2 81 76.5
Phvul.004G068100 Phaseolus vulgaris HOM05D004665 ORTHO05D006264 1.2e-28 130.2 80 76.2
Rhsim08G0037600 Rhododendron simsii HOM05D004665 ORTHO05D006264 1.2e-28 130.2 81 74.1
AUR62032536 Chenopodium quinoa HOM05D004665 ORTHO05D006264 1.6e-28 129.8 80 76.2
Lalb_Chr02g0156931 Lupinus albus HOM05D004665 ORTHO05D006264 1.6e-28 129.8 80 75.0
Lalb_Chr21g0316981 Lupinus albus HOM05D004665 ORTHO05D006264 1.6e-28 129.8 80 75.0
MSTRG.3035 Avicennia marina HOM05D004665 ORTHO05D006264 3.5e-28 128.6 81 72.8
Oeu050153.1 Olea europaea HOM05D004665 ORTHO05D006264 3.5e-28 128.6 81 71.6
CANSAT64G2474 Cannabis sativa HOM05D004665 ORTHO05D006264 4.5e-28 128.3 81 75.3
Manes.04G097200 Manihot esculenta HOM05D004665 ORTHO05D006264 4.5e-28 128.3 81 75.3
Nitab4.5_0002901g0090 Nicotiana tabacum HOM05D004665 ORTHO05D006264 1.0e-27 127.1 86 72.1
Aqoxy5G03000 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 1.3e-27 126.7 81 75.3
ECA238G3366 Erigeron canadensis HOM05D004665 ORTHO05D006264 1.3e-27 126.7 80 77.5
SalBow4G0739 Salvia bowleyana HOM05D004665 ORTHO05D006264 1.3e-27 126.7 81 72.8
Peaxi162Scf00420g00931 Petunia axillaris HOM05D004665 ORTHO05D006264 1.7e-27 126.3 79 74.7
Nitab4.5_0000519g0340 Nicotiana tabacum HOM05D004665 ORTHO05D006264 3.8e-27 125.2 81 74.1
Lj7A619T48 Lonicera japonica HOM05D004665 ORTHO05D006264 5.0e-27 124.8 81 72.8
CAN.G473.165 Capsicum annuum HOM05D004665 ORTHO05D006264 1.5e-26 123.2 81 71.6
Haze_14984 Corylus avellana HOM05D004665 ORTHO05D006264 1.9e-26 122.9 111 57.7
DCAR_014318 Daucus carota HOM05D004665 ORTHO05D006264 1.9e-26 122.9 81 70.4
CDE02G1303 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 7.2e-26 120.9 79 69.6
HanXRQChr07g0197991 Helianthus annuus HOM05D004665 ORTHO05D006264 7.2e-26 120.9 80 72.5
Cc07_g01420 Coffea canephora HOM05D004665 ORTHO05D006264 2.1e-25 119.4 79 73.4
HanXRQChr14g0451551 Helianthus annuus HOM05D004665 ORTHO05D006264 2.7e-25 119.0 80 72.5
CDE06G1855 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 6.1e-25 117.9 85 65.9
Os02g0518100 Oryza sativa ssp. japonica HOM05D004665 ORTHO05D006264 8.0e-25 117.5 81 67.9
Nn4g22078 Nelumbo nucifera HOM05D004665 ORTHO05D006264 1.0e-24 117.1 81 70.4
Zm00001eb242230 Zea mays HOM05D004665 ORTHO05D006264 3.0e-24 115.5 81 66.7
CAN.G1393.18 Capsicum annuum HOM05D004665 ORTHO05D006264 4.0e-24 115.2 79 68.4
HPP92_009749 Vanilla planifolia HOM05D004665 ORTHO05D006264 5.2e-24 114.8 81 66.7
Pp3c8_3640 Physcomitrium patens HOM05D004665 ORTHO05D006264 8.8e-24 114.0 128 48.4
HPP92_021581 Vanilla planifolia HOM05D004665 ORTHO05D006264 2.0e-23 112.8 81 63.0
Nitab4.5_0003951g0020 Nicotiana tabacum HOM05D004665 ORTHO05D006264 5.7e-23 111.3 80 67.5
EL10Ac6g13903 Beta vulgaris HOM05D004665 ORTHO05D006264 2.2e-22 109.4 131 48.1
Peaxi162Scf00058g00033 Petunia axillaris HOM05D004665 ORTHO05D006264 2.8e-22 109.0 79 64.6
Pp3c3_36320 Physcomitrium patens HOM05D004665 ORTHO05D006264 4.8e-22 108.2 126 46.8
Solyc01g086730.4 Solanum lycopersicum HOM05D004665 ORTHO05D006264 1.1e-21 107.1 124 47.6
PGSC0003DMG400025244 Solanum tuberosum HOM05D004665 ORTHO05D006264 1.1e-21 107.1 79 65.8
Sopen01g033730 Solanum pennellii HOM05D004665 ORTHO05D006264 1.4e-21 106.7 79 64.6
Mapoly0166s0011 Marchantia polymorpha HOM05D004665 ORTHO05D006264 3.1e-21 105.5 96 53.1
AagrBONN_evm.TU.Sc2ySwM_117.2741 Anthoceros agrestis HOM05D004665 ORTHO05D006264 7.0e-21 104.4 82 57.3
Haze_14979 Corylus avellana HOM05D004665 ORTHO05D006264 7.7e-20 100.9 111 53.2
BcaB07g30221 Brassica carinata HOM05D004665 ORTHO05D006264 3.3e-18 95.5 49 93.9
arahy.Tifrunner.gnm1.ann1.1F18R3 Arachis hypogaea HOM05D004665 ORTHO05D006264 5.5e-18 94.7 78 57.7
BolC3t19617H Brassica oleracea HOM05D004665 ORTHO05D021400 2.3e-16 89.4 58 75.9
C09p15630 Brassica napus HOM05D004665 ORTHO05D021400 4.9e-14 81.6 64 67.2
CARHR285500 Cardamine hirsuta HOM05D004665 ORTHO05D021400 4.9e-14 81.6 40 92.5
Cre08.g358400 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 6.3e-14 81.3 76 47.4
Hund04137 Selenicereus undatus HOM05D004665 ORTHO05D006264 1.8e-13 79.7 63 57.1
Cre12.g523100 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 3.2e-13 79.0 77 49.4
AL8G25090 Arabidopsis lyrata HOM05D001356 ORTHO05D005768 1.2e-12 77.0 50 80.0
AT5G50900 Arabidopsis thaliana HOM05D001356 ORTHO05D005768 1.2e-12 77.0 50 80.0
SEGI_40793 Sequoiadendron giganteum HOM05D004665 ORTHO05D006264 1.2e-12 77.0 52 69.2
HPP92_009766 Vanilla planifolia HOM05D004665 ORTHO05D006264 2.0e-12 76.3 72 55.6
Carub.0008s1090 Capsella rubella HOM05D001356 ORTHO05D005768 3.5e-12 75.5 51 80.4
Sp6g13030 Schrenkiella parvula HOM05D001356 ORTHO05D005768 3.5e-12 75.5 50 80.0
MELO3C014760.2 Cucumis melo HOM05D004665 ORTHO05D006264 7.8e-12 74.3 44 75.0
Manes.11G073500 Manihot esculenta HOM05D004665 ORTHO05D006264 7.8e-12 74.3 51 72.5
Duzib264G1200 Durio zibethinus HOM05D004665 ORTHO05D006264 1.0e-11 73.9 37 86.5
SGA_v2.0_scaffold44G16957 Striga asiatica HOM05D004665 ORTHO05D006264 2.3e-11 72.8 49 63.3
Hma1.2p1_0040F.1_g025010 Hydrangea macrophylla HOM05D004665 ORTHO05D021400 2.9e-11 72.4 66 56.1
C03p73200 Brassica napus HOM05D004665 ORTHO05D021400 1.5e-10 70.1 64 59.4
Thhalv10013161m.g Eutrema salsugineum HOM05D001356 ORTHO05D005768 1.2e-09 67.0 50 64.0
Lsat_1_v5_gn_2_95241 Lactuca sativa HOM05D005263 ORTHO05D006891 2.1e-09 66.2 53 64.2
Aa31LG3G7400 Aethionema arabicum HOM05D001356 ORTHO05D005768 2.8e-09 65.9 50 72.0
Cpa.g.sc70.39 Carica papaya HOM05D004665 ORTHO05D006264 2.8e-09 65.9 37 81.1
Aqoxy271s006 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 6.1e-09 64.7 33 84.8
Lsat_1_v5_gn_8_141180 Lactuca sativa HOM05D004665 ORTHO05D006264 3.1e-08 62.4 51 62.7
THA.LOC104808043 Tarenaya hassleriana HOM05D001356 ORTHO05D005768 2.6e-07 59.3 50 64.0
Gohir.D09G248500 Gossypium hirsutum HOM05D001356 ORTHO05D005768 5.8e-07 58.2 50 50.0
Gorai.006G272800 Gossypium raimondii HOM05D001356 ORTHO05D005768 5.8e-07 58.2 50 50.0
Manes.06G124800 Manihot esculenta HOM05D001356 ORTHO05D005768 7.5e-07 57.8 50 58.0
Zm00001eb180680 Zea mays HOM05D004665 ORTHO05D006264 1.3e-06 57.0 37 70.3
CARHR257360 Cardamine hirsuta HOM05D001356 ORTHO05D005768 2.2e-06 56.2 50 62.0
Cfa018730 Carpinus fangiana HOM05D001356 ORTHO05D005768 2.9e-06 55.8 50 56.0
Gohir.A09G247700 Gossypium hirsutum HOM05D001356 ORTHO05D005768 2.9e-06 55.8 49 51.0
BolC5t34563H Brassica oleracea HOM05D001356 ORTHO05D005768 3.7e-06 55.5 49 69.4
TAR629G3251 Trochodendron aralioides HOM05D001356 ORTHO05D005768 4.9e-06 55.1 50 48.0
Cpa.g.sc4.117 Carica papaya HOM05D001356 ORTHO05D005768 8.3e-06 54.3 50 52.0
Haze_07122 Corylus avellana HOM05D001356 ORTHO05D005768 8.3e-06 54.3 50 54.0
Hma1.2p1_1395F.1_g280510 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 8.3e-06 54.3 45 60.0


User provided reference genes

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