Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G17770 Arabidopsis lyrata HOM05D013377 ORTHO05D015364 2.0e-126 456.1 277 100.0
AT5G43000 Arabidopsis thaliana HOM05D013377 ORTHO05D015364 6.9e-71 271.6 234 64.5
CARHR181020 Cardamine hirsuta HOM05D013377 ORTHO05D015364 4.5e-70 268.9 142 90.1
Thhalv10003379m.g Eutrema salsugineum HOM05D013377 ORTHO05D015364 3.7e-64 249.2 165 77.6
Sp2g07760 Schrenkiella parvula HOM05D013377 ORTHO05D015364 3.1e-63 246.1 157 78.3
A02p27620 Brassica napus HOM05D013377 ORTHO05D015364 2.1e-59 233.4 160 74.4
BraA02t07796Z Brassica rapa HOM05D013377 ORTHO05D015364 2.1e-59 233.4 160 74.4
BcaC03g16548 Brassica carinata HOM05D013377 ORTHO05D015364 3.0e-58 229.6 160 75.0
C02p43680 Brassica napus HOM05D013377 ORTHO05D015364 3.0e-58 229.6 160 75.0
BcaB07g30596 Brassica carinata HOM05D013377 ORTHO05D015364 2.9e-53 213.0 160 70.0
Carub.0008s0575 Capsella rubella HOM05D013377 ORTHO05D015364 7.2e-52 208.4 180 63.3
BolC2t10409H Brassica oleracea HOM05D013377 ORTHO05D015364 9.1e-31 138.3 97 71.1
AL1G18010 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 1.1e-23 114.8 66 90.9
AL3G26140 Arabidopsis lyrata HOM05D000448 ORTHO05D000291 1.4e-23 114.4 66 90.9
AL8G33770 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 2.4e-23 113.6 66 90.9
Carub.0006s3105 Capsella rubella HOM05D001031 ORTHO05D000857 5.4e-23 112.5 66 89.4
AL6G46720 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 5.9e-22 109.0 63 90.5
Thhalv10029314m.g Eutrema salsugineum HOM05D001031 ORTHO05D000857 5.9e-22 109.0 66 86.4
Sp6g05560 Schrenkiella parvula HOM05D001031 ORTHO05D000857 2.6e-17 93.6 56 85.7
AT4G11950 Arabidopsis thaliana HOM05D001031 ORTHO05D000857 1.3e-16 91.3 50 88.0
THA.LOC104806357 Tarenaya hassleriana HOM05D001031 ORTHO05D000857 6.3e-16 89.0 60 85.0
AT4G22900 Arabidopsis thaliana HOM05D001031 ORTHO05D000857 3.1e-15 86.7 69 69.6
CARHR254340 Cardamine hirsuta HOM05D001031 ORTHO05D000857 4.1e-15 86.3 49 87.8
Sp7g20970 Schrenkiella parvula HOM05D001031 ORTHO05D000857 7.7e-14 82.0 73 68.5
Aa31LG6G4970 Aethionema arabicum HOM05D001031 ORTHO05D000857 1.0e-13 81.6 62 74.2
BcaNung01662 Brassica carinata HOM05D001031 ORTHO05D000857 1.0e-13 81.6 67 73.1
BcaNung01663 Brassica carinata HOM05D001031 ORTHO05D000857 1.0e-13 81.6 67 73.1
A03p53860 Brassica napus HOM05D001031 ORTHO05D000857 1.0e-13 81.6 67 73.1
C07p52260 Brassica napus HOM05D001031 ORTHO05D000857 1.0e-13 81.6 67 73.1
BolC7t45720H Brassica oleracea HOM05D001031 ORTHO05D000857 1.0e-13 81.6 67 73.1
BraA03t14455Z Brassica rapa HOM05D001031 ORTHO05D000857 1.0e-13 81.6 67 73.1
Carub.0007s1838 Capsella rubella HOM05D001031 ORTHO05D000857 1.7e-13 80.9 63 73.0
AL7G30620 Arabidopsis lyrata HOM05D001031 ORTHO05D000857 2.3e-13 80.5 63 73.0
CARHR229940 Cardamine hirsuta HOM05D001031 ORTHO05D000857 2.3e-13 80.5 73 67.1
THA.LOC104814149 Tarenaya hassleriana HOM05D001031 ORTHO05D000857 5.0e-13 79.3 57 80.7
FvH4_5g01210 Fragaria vesca HOM05D001031 ORTHO05D000857 8.6e-13 78.6 69 66.7
FAN08G2622 Fragaria x ananassa HOM05D001031 ORTHO05D000857 8.6e-13 78.6 69 66.7
FAN18G3641 Fragaria x ananassa HOM05D001031 ORTHO05D000857 8.6e-13 78.6 69 66.7
Eucgr.D01942 Eucalyptus grandis HOM05D001031 ORTHO05D000857 1.1e-12 78.2 58 75.9
Aa31LG9G10520 Aethionema arabicum HOM05D001031 ORTHO05D000857 1.5e-12 77.8 61 75.4
Ciclev10021289m.g Citrus clementina HOM05D001031 ORTHO05D000857 5.6e-12 75.9 60 73.3
TWI60G0074 Tripterygium wilfordii HOM05D001031 ORTHO05D000857 7.3e-12 75.5 61 70.5
CANSAT21G0026 Cannabis sativa HOM05D001031 ORTHO05D000857 9.5e-12 75.1 57 73.7
Thhalv10027461m.g Eutrema salsugineum HOM05D001031 ORTHO05D000857 1.2e-11 74.7 57 75.4
Nn6g34324 Nelumbo nucifera HOM05D001031 ORTHO05D000857 1.2e-11 74.7 61 65.6
Duzib205G1613 Durio zibethinus HOM05D001031 ORTHO05D000857 1.6e-11 74.3 61 70.5
FAN04G0527 Fragaria x ananassa HOM05D001031 ORTHO05D000857 1.6e-11 74.3 68 64.7
FAN13G2178 Fragaria x ananassa HOM05D001031 ORTHO05D000857 1.6e-11 74.3 68 66.2
Cfa012073 Carpinus fangiana HOM05D001031 ORTHO05D000857 2.1e-11 73.9 61 67.2
CiPaw.11G143100 Carya illinoinensis HOM05D001031 ORTHO05D000857 2.8e-11 73.6 61 67.2
Thecc.03G268100 Theobroma cacao HOM05D001031 ORTHO05D000857 2.8e-11 73.6 61 70.5
Dinv39037 Davidia involucrata HOM05D001031 ORTHO05D000857 3.6e-11 73.2 61 65.6
Cpa.g.sc29.38 Carica papaya HOM05D001031 ORTHO05D000857 6.1e-11 72.4 68 61.8
Dinv37707 Davidia involucrata HOM05D000114 ORTHO05D000857 6.1e-11 72.4 61 63.9
Manes.01G069900 Manihot esculenta HOM05D001031 ORTHO05D000857 6.1e-11 72.4 61 67.2
AUR62017325 Chenopodium quinoa HOM05D001031 ORTHO05D000857 8.0e-11 72.0 57 70.2
Prupe.5G087200 Prunus persica HOM05D001031 ORTHO05D000857 8.0e-11 72.0 61 65.6
Potri.001G112800 Populus trichocarpa HOM05D001031 ORTHO05D000857 1.0e-10 71.6 57 73.7
AUR62010564 Chenopodium quinoa HOM05D001031 ORTHO05D000857 1.4e-10 71.2 57 70.2
Ca_25858_v3 Cicer arietinum L. HOM05D001031 ORTHO05D000857 1.4e-10 71.2 60 68.3
Ah.12g057840 Amaranthus hybridus HOM05D001031 ORTHO05D000857 1.8e-10 70.9 62 62.9
Gohir.A09G193700 Gossypium hirsutum HOM05D001031 ORTHO05D000857 1.8e-10 70.9 60 68.3
RcHm_v2.0_Chr7g0199881 Rosa chinensis HOM05D001031 ORTHO05D000857 2.3e-10 70.5 68 63.2
MSTRG.1909 Avicennia marina HOM05D001031 ORTHO05D000857 3.0e-10 70.1 61 65.6
HanXRQChr17g0533821 Helianthus annuus HOM05D001031 ORTHO05D000857 3.0e-10 70.1 68 61.8
Sabra01G0086200 Salix brachista HOM05D001031 ORTHO05D000857 3.0e-10 70.1 57 71.9
Lsat_1_v5_gn_3_4481 Lactuca sativa HOM05D001031 ORTHO05D000857 4.0e-10 69.7 68 60.3
TAR629G2411 Trochodendron aralioides HOM05D001031 ORTHO05D000857 4.0e-10 69.7 62 61.3
MSTRG.12033 Avicennia marina HOM05D001031 ORTHO05D000857 5.2e-10 69.3 61 63.9
CAN.G981.60 Capsicum annuum HOM05D001031 ORTHO05D000857 5.2e-10 69.3 70 57.1
Lj8P243T16 Lonicera japonica HOM05D001031 ORTHO05D000857 5.2e-10 69.3 57 68.4
MD04G1070700 Malus domestica HOM05D001031 ORTHO05D000857 5.2e-10 69.3 59 67.8
Sed0004189 Sechium edule HOM05D001031 ORTHO05D000857 5.2e-10 69.3 61 65.6
DCAR_000892 Daucus carota HOM05D001031 ORTHO05D000857 6.8e-10 68.9 57 71.9
Sabra03G0083400 Salix brachista HOM05D001031 ORTHO05D000857 6.8e-10 68.9 65 61.5
Medtr3g010800 Medicago truncatula HOM05D001031 ORTHO05D000857 8.9e-10 68.6 60 65.0
Potri.003G119400 Populus trichocarpa HOM05D001031 ORTHO05D000857 8.9e-10 68.6 57 68.4
Rhsim07G0096400 Rhododendron simsii HOM05D001031 ORTHO05D000857 8.9e-10 68.6 57 68.4
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.2e-09 68.2 61 63.9
ClCG01G003310 Citrullus lanatus HOM05D001031 ORTHO05D000857 1.2e-09 68.2 61 63.9
TPR.G5097 Trifolium pratense HOM05D001031 ORTHO05D000857 1.2e-09 68.2 60 61.7
Aqoxy7G00503 Aquilegia oxysepala HOM05D001031 ORTHO05D000857 1.5e-09 67.8 61 63.9
BcaC04g21181 Brassica carinata HOM05D001031 ORTHO05D000857 1.5e-09 67.8 39 84.6
A09p27180 Brassica napus HOM05D001031 ORTHO05D000857 1.5e-09 67.8 39 84.6
C09p34500 Brassica napus HOM05D001031 ORTHO05D000857 1.5e-09 67.8 39 84.6
BolC9t56294H Brassica oleracea HOM05D001031 ORTHO05D000857 1.5e-09 67.8 39 84.6
BraA09t38286Z Brassica rapa HOM05D001031 ORTHO05D000857 1.5e-09 67.8 39 84.6
ECA246G0805 Erigeron canadensis HOM05D001031 ORTHO05D000857 1.5e-09 67.8 67 58.2
PGSC0003DMG400022733 Solanum tuberosum HOM05D001031 ORTHO05D000857 2.0e-09 67.4 61 62.3
MD00G1122700 Malus domestica HOM05D001031 ORTHO05D000857 2.6e-09 67.0 58 67.2
Haze_08986 Corylus avellana HOM05D001031 ORTHO05D000857 3.4e-09 66.6 56 67.9
Lalb_Chr18g0048221 Lupinus albus HOM05D001031 ORTHO05D000857 3.4e-09 66.6 56 67.9
SGA_v2.0_scaffold146G36213 Striga asiatica HOM05D001031 ORTHO05D000857 3.4e-09 66.6 69 59.4
EL10Ac5g12687 Beta vulgaris HOM05D001031 ORTHO05D000857 4.4e-09 66.2 57 63.2
BcaB01g01694 Brassica carinata HOM05D001031 ORTHO05D000857 1.3e-08 64.7 39 82.1
BcaC04g21179 Brassica carinata HOM05D001031 ORTHO05D000857 1.3e-08 64.7 39 82.1
SGA_v2.0_scaffold196G40905 Striga asiatica HOM05D001031 ORTHO05D000857 1.7e-08 64.3 60 61.7
Actinidia02061 Actinidia chinensis HOM05D001031 ORTHO05D000857 2.2e-08 63.9 45 73.3
arahy.Tifrunner.gnm1.ann1.4YMZ2P Arachis hypogaea HOM05D001031 ORTHO05D000857 2.2e-08 63.9 60 60.0
PSO478G3211 Papaver somniferum HOM05D001031 ORTHO05D000857 2.2e-08 63.9 61 59.0
Migut.A00896 Erythranthe guttata HOM05D001031 ORTHO05D000857 2.9e-08 63.5 62 62.9
PSO782G0673 Papaver somniferum HOM05D001031 ORTHO05D000857 2.9e-08 63.5 61 59.0
Gohir.A08G177100 Gossypium hirsutum HOM05D001031 ORTHO05D000857 3.7e-08 63.2 46 76.1
Oeu056819.1 Olea europaea HOM05D001031 ORTHO05D000857 3.7e-08 63.2 56 62.5
Gohir.D08G195400 Gossypium hirsutum HOM05D001031 ORTHO05D000857 4.9e-08 62.8 46 73.9
Gorai.004G206200 Gossypium raimondii HOM05D001031 ORTHO05D000857 4.9e-08 62.8 46 73.9
Gohir.D09G187900 Gossypium hirsutum HOM05D001031 ORTHO05D000857 8.3e-08 62.0 51 68.6
GSVIVG01019888001 Vitis vinifera HOM05D001031 ORTHO05D000857 8.3e-08 62.0 52 69.2
HanXRQChr13g0415771 Helianthus annuus HOM05D001031 ORTHO05D000857 1.1e-07 61.6 44 72.7
Gorai.006G210700 Gossypium raimondii HOM05D001031 ORTHO05D000857 1.8e-07 60.8 51 68.6
Lsat_1_v5_gn_6_79001 Lactuca sativa HOM05D001031 ORTHO05D000857 1.8e-07 60.8 44 75.0
Oeu021146.1 Olea europaea HOM05D001031 ORTHO05D000857 1.8e-07 60.8 56 58.9
Solyc08g080070.1 Solanum lycopersicum HOM05D001031 ORTHO05D000857 1.8e-07 60.8 56 62.5
Sopen08g028420 Solanum pennellii HOM05D001031 ORTHO05D000857 1.8e-07 60.8 56 62.5
ATR0661G515 Amborella trichopoda HOM05D001031 ORTHO05D000857 2.4e-07 60.5 62 58.1
arahy.Tifrunner.gnm1.ann1.K5BFLR Arachis hypogaea HOM05D001031 ORTHO05D000857 2.4e-07 60.5 51 64.7
Cc08_g13750 Coffea canephora HOM05D001031 ORTHO05D000857 2.4e-07 60.5 46 73.9
Migut.E01181 Erythranthe guttata HOM05D001031 ORTHO05D000857 2.4e-07 60.5 58 62.1
Sc01g0008900 Simmondsia chinensis HOM05D001031 ORTHO05D000857 2.4e-07 60.5 50 68.0
Lj3g0020372 Lotus japonicus HOM05D001031 ORTHO05D000857 3.2e-07 60.1 58 58.6
Manes.02G029800 Manihot esculenta HOM05D001031 ORTHO05D000857 4.1e-07 59.7 59 62.7
Nitab4.5_0001714g0040 Nicotiana tabacum HOM05D001031 ORTHO05D000857 4.1e-07 59.7 61 55.7
Phvul.005G012300 Phaseolus vulgaris HOM05D001031 ORTHO05D000857 4.1e-07 59.7 59 59.3
VMungo1080G1895 Vigna mungo HOM05D001031 ORTHO05D000857 4.1e-07 59.7 59 59.3
Duzib084G0533 Durio zibethinus HOM05D001031 ORTHO05D000857 5.4e-07 59.3 50 68.0
Nitab4.5_0010547g0030 Nicotiana tabacum HOM05D000114 ORTHO05D000075 7.0e-07 58.9 51 62.7
Glyma.04G124500 Glycine max HOM05D001031 ORTHO05D000857 1.2e-06 58.2 54 63.0
PGR031G0037 Punica granatum HOM05D001031 ORTHO05D000857 1.2e-06 58.2 42 73.8
CiPaw.12G100700 Carya illinoinensis HOM05D001031 ORTHO05D000857 2.7e-06 57.0 42 73.8
ECA240G4149 Erigeron canadensis HOM05D001031 ORTHO05D000857 2.7e-06 57.0 45 71.1
Glyma.06G313800 Glycine max HOM05D001031 ORTHO05D000857 2.7e-06 57.0 47 68.1
Glyma.06G313900 Glycine max HOM05D001031 ORTHO05D000857 2.7e-06 57.0 47 68.1
MBI11_g11980_MAGBIO Magnolia biondii HOM05D001031 ORTHO05D000857 2.7e-06 57.0 59 62.7
COL.COLO4_23797 Corchorus olitorius HOM05D001031 ORTHO05D000857 3.5e-06 56.6 46 69.6
MELO3C005614.2 Cucumis melo HOM05D001031 ORTHO05D000857 4.6e-06 56.2 52 59.6
Psat0s1896g0080 Pisum sativum HOM05D001031 ORTHO05D000857 4.6e-06 56.2 50 62.0
Gohir.A12G223700 Gossypium hirsutum HOM05D001031 ORTHO05D000857 5.9e-06 55.8 46 67.4
Gohir.D12G226300 Gossypium hirsutum HOM05D001031 ORTHO05D000857 5.9e-06 55.8 46 67.4
Gorai.008G242300 Gossypium raimondii HOM05D001031 ORTHO05D000857 5.9e-06 55.8 46 67.4


User provided reference genes

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