Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.6e-35 152.1 72 100.0
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.6e-35 152.1 72 100.0
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.3e-34 149.1 72 95.8
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.8e-34 148.7 72 97.2
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 6.7e-34 146.7 72 95.8
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-33 146.0 72 95.8
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-33 146.0 72 95.8
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.1e-33 146.0 72 95.8
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.1e-33 146.0 72 95.8
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 1.1e-33 146.0 72 95.8
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.1e-33 146.0 72 95.8
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.5e-33 145.6 72 95.8
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 5.6e-33 143.7 72 94.4
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.6e-32 142.1 70 97.1
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 6.2e-32 140.2 72 91.7
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-31 139.4 72 93.1
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 1.1e-31 139.4 72 93.1
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.1e-31 139.4 72 93.1
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 1.1e-31 139.4 72 93.1
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 1.1e-31 139.4 72 93.1
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 1.8e-31 138.7 72 90.3
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 2.4e-31 138.3 72 90.3
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 3.1e-31 137.9 72 90.3
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 4.0e-31 137.5 72 87.5
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 6.9e-31 136.7 72 86.1
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 1.5e-30 135.6 72 87.5
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.0e-30 135.2 72 86.1
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 3.4e-30 134.4 72 87.5
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 4.5e-30 134.0 72 86.1
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 4.5e-30 134.0 72 86.1
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 5.8e-30 133.7 72 86.1
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 5.8e-30 133.7 72 86.1
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 7.6e-30 133.3 72 87.5
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 7.6e-30 133.3 72 86.1
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 7.6e-30 133.3 72 84.7
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.0e-29 132.9 72 86.1
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 1.3e-29 132.5 72 84.7
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 2.2e-29 131.7 72 84.7
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.2e-29 131.7 72 84.7
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.9e-29 131.3 72 86.1
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 2.9e-29 131.3 72 86.1
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.8e-29 131.0 72 84.7
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 3.8e-29 131.0 72 84.7
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 4.9e-29 130.6 72 84.7
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 4.9e-29 130.6 72 83.3
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 6.5e-29 130.2 72 84.7
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 6.5e-29 130.2 72 86.1
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 6.5e-29 130.2 72 86.1
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 6.5e-29 130.2 72 83.3
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 6.5e-29 130.2 72 84.7
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 8.4e-29 129.8 72 83.3
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 8.4e-29 129.8 72 83.3
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 1.1e-28 129.4 72 83.3
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.1e-28 129.4 72 83.3
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.4e-28 129.0 72 83.3
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.4e-28 129.0 72 80.6
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 1.4e-28 129.0 72 83.3
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 1.4e-28 129.0 72 83.3
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.9e-28 128.6 72 83.3
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 2.5e-28 128.3 72 80.6
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 2.5e-28 128.3 72 83.3
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 3.2e-28 127.9 72 83.3
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.2e-28 127.9 71 84.5
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 4.2e-28 127.5 72 83.3
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 4.2e-28 127.5 72 81.9
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 4.2e-28 127.5 72 80.6
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.5e-28 127.1 72 80.6
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.5e-28 127.1 72 80.6
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 5.5e-28 127.1 72 80.6
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 5.5e-28 127.1 72 81.9
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 7.1e-28 126.7 72 83.3
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 9.3e-28 126.3 72 79.2
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 9.3e-28 126.3 72 83.3
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 9.3e-28 126.3 72 83.3
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 9.3e-28 126.3 72 83.3
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 9.3e-28 126.3 72 83.3
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 9.3e-28 126.3 72 80.6
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 9.3e-28 126.3 72 79.2
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.2e-27 125.9 72 80.6
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 1.2e-27 125.9 72 83.3
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 1.6e-27 125.6 72 79.2
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 1.6e-27 125.6 72 80.6
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 2.1e-27 125.2 72 79.2
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 2.1e-27 125.2 72 81.9
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.1e-27 125.2 72 79.2
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 3.5e-27 124.4 72 80.6
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 3.5e-27 124.4 72 80.6
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 3.5e-27 124.4 72 80.6
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 4.6e-27 124.0 72 76.4
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 4.6e-27 124.0 72 80.6
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 6.0e-27 123.6 72 76.4
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 6.0e-27 123.6 72 76.4
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 7.9e-27 123.2 72 76.4
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 1.8e-26 122.1 72 81.9
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 2.3e-26 121.7 72 77.8
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.3e-26 121.7 72 77.8
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 5.1e-26 120.6 72 79.2
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 5.1e-26 120.6 72 77.8
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 6.7e-26 120.2 72 79.2
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 8.7e-26 119.8 72 76.4
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 1.9e-25 118.6 72 76.4
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 5.7e-25 117.1 72 73.6
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 2.1e-24 115.2 81 70.4
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 2.8e-24 114.8 72 73.6
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.1e-23 112.8 72 73.6
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.2e-22 109.4 72 70.8
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 2.0e-22 108.6 71 66.2
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 5.8e-22 107.1 71 69.0
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 8.4e-21 103.2 72 75.0
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 7.1e-20 100.1 72 62.5
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 3.5e-19 97.8 58 75.9
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 4.6e-19 97.4 51 86.3
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.3e-18 95.9 52 86.5
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 3.0e-18 94.7 60 71.7
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.4e-15 85.9 71 54.9
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 1.8e-15 85.5 71 57.7
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.8e-15 85.5 71 59.2
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 5.3e-15 84.0 72 61.1
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 5.3e-15 84.0 71 54.9
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.0e-14 82.0 71 57.7
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.3e-13 79.3 71 54.9
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.1e-09 66.2 71 43.7
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 6.3e-08 60.5 48 64.6
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 1.1e-07 59.7 78 42.3
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 1.4e-07 59.3 54 57.4
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.4e-07 59.3 31 90.3
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 2.6e-06 55.1 72 44.4


User provided reference genes

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