Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.1e-116 423.3 217 100.0
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.4e-97 358.6 243 79.8
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.2e-96 355.9 243 79.4
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 3.3e-92 342.0 243 75.3
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 3.4e-89 332.0 238 73.9
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 9.8e-89 330.5 238 73.5
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.3e-88 330.1 238 73.1
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.3e-88 330.1 243 73.3
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.7e-88 329.7 238 73.5
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 2.9e-88 328.9 238 73.5
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.9e-88 328.9 238 73.5
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.9e-88 328.9 243 72.8
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 8.3e-88 327.4 243 73.3
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.2e-86 323.6 238 72.3
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 5.6e-84 314.7 238 71.4
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 6.2e-83 311.2 243 70.8
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 9.2e-79 297.4 237 69.2
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 5.2e-74 281.6 214 73.4
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.7e-72 276.6 238 61.8
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.2e-72 276.2 237 61.6
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 3.7e-72 275.4 238 61.3
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 6.4e-72 274.6 238 61.3
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 8.3e-72 274.2 235 62.1
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.9e-71 273.1 238 60.1
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 3.2e-71 272.3 237 61.2
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 9.2e-71 270.8 230 61.7
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.5e-70 268.9 238 59.7
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 7.8e-70 267.7 238 60.1
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.3e-69 266.9 242 58.3
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.3e-69 266.9 238 60.1
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.7e-69 266.5 239 58.6
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.7e-69 266.5 235 60.4
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 3.9e-69 265.4 238 58.8
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 6.6e-69 264.6 238 58.8
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.1e-68 263.8 238 59.7
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 1.1e-68 263.8 238 58.8
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 1.1e-68 263.8 238 59.7
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 3.3e-68 262.3 238 58.4
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 4.3e-68 261.9 235 58.7
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 4.3e-68 261.9 238 56.7
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 5.6e-68 261.5 238 58.8
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 7.3e-68 261.2 238 58.8
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.3e-68 261.2 238 58.8
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 7.3e-68 261.2 238 58.4
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 9.5e-68 260.8 238 59.2
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 9.5e-68 260.8 232 59.5
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 2.1e-67 259.6 235 59.1
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-67 259.2 225 60.4
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 4.7e-67 258.5 238 58.0
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 4.7e-67 258.5 232 60.8
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 4.7e-67 258.5 233 59.2
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 6.2e-67 258.1 238 55.5
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 8.1e-67 257.7 238 57.1
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 8.1e-67 257.7 238 55.0
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.4e-66 256.9 232 58.6
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.4e-66 256.9 237 56.5
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.8e-66 256.5 238 58.4
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.8e-66 256.5 234 57.3
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.8e-66 256.5 238 56.3
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.8e-66 256.5 237 56.5
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 2.3e-66 256.1 235 58.3
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 2.3e-66 256.1 235 58.3
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.3e-66 256.1 238 58.8
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 3.1e-66 255.8 232 59.1
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 3.1e-66 255.8 238 55.9
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 3.1e-66 255.8 238 55.5
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.1e-66 255.8 238 57.6
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 5.2e-66 255.0 235 57.9
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 8.9e-66 254.2 237 56.1
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 8.9e-66 254.2 237 57.0
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 8.9e-66 254.2 234 59.0
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.2e-65 253.8 237 57.8
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-65 253.8 238 57.6
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.2e-65 253.8 241 54.8
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.5e-65 253.4 237 55.7
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.5e-65 253.4 238 57.1
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.5e-65 253.4 237 56.1
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.6e-65 252.7 237 56.5
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.6e-65 252.7 234 59.0
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 4.4e-65 251.9 238 57.1
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.4e-65 251.9 241 57.7
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 7.6e-65 251.1 237 57.0
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 7.6e-65 251.1 238 57.1
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 9.9e-65 250.8 237 57.8
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.3e-64 250.4 237 57.0
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 1.3e-64 250.4 237 56.5
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.3e-64 250.4 268 53.7
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.2e-64 249.6 237 55.3
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.2e-64 249.6 237 55.3
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.9e-64 249.2 238 55.0
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 2.9e-64 249.2 241 56.8
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 3.8e-64 248.8 235 57.9
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 4.9e-64 248.4 237 55.7
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 8.4e-64 247.7 219 58.9
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 8.4e-64 247.7 237 55.3
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.1e-63 247.3 238 55.0
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.1e-63 247.3 234 55.1
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.1e-63 247.3 237 56.5
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.4e-63 246.9 237 58.2
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 4.1e-63 245.4 237 57.4
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 5.4e-63 245.0 237 55.7
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.2e-62 243.8 232 57.3
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.1e-62 243.0 237 55.3
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 3.5e-62 242.3 234 55.1
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 4.6e-62 241.9 237 53.2
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 7.8e-62 241.1 230 58.7
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 7.8e-62 241.1 235 54.0
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.8e-62 241.1 211 61.1
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.0e-61 240.7 232 55.2
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 1.3e-61 240.4 237 54.4
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.6e-61 238.0 238 54.6
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.1e-60 237.3 238 52.9
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.9e-60 236.5 232 55.6
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.5e-60 236.1 230 56.1
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.3e-60 235.3 237 53.6
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 5.6e-60 235.0 238 54.2
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 4.7e-59 231.9 237 53.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 3.1e-58 229.2 237 51.9
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 6.4e-56 221.5 234 51.7
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 7.1e-55 218.0 320 41.6
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-54 217.2 233 53.2
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.3e-53 213.0 228 49.6
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 8.7e-53 211.1 240 50.8
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 8.7e-53 211.1 202 57.4
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 3.3e-52 209.1 219 51.6
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 5.6e-52 208.4 202 55.4
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.6e-49 199.5 213 51.6
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.2e-46 190.7 202 51.0
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 3.0e-45 186.0 232 45.7
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.3e-44 182.2 129 72.9
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.8e-43 178.7 129 72.9
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 4.8e-43 178.7 240 44.6
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 5.3e-42 175.3 129 70.5
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 6.9e-42 174.9 147 64.6
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 3.4e-41 172.6 129 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 2.2e-40 169.9 231 41.1
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 6.4e-40 168.3 229 41.9
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 9.3e-39 164.5 177 51.4
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.6e-38 163.7 129 68.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.9e-37 159.1 181 50.8
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 6.2e-35 151.8 119 71.4
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 1.4e-34 150.6 137 62.0
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 3.1e-34 149.4 82 92.7
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 6.9e-34 148.3 112 74.1
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 9.3e-31 137.9 105 67.6
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 9.3e-31 137.9 175 44.0
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.2e-30 137.5 93 79.6
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.6e-30 137.1 143 51.7
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 2.1e-30 136.7 129 58.1
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 1.1e-28 131.0 135 51.1
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 2.5e-28 129.8 143 47.6
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 3.3e-28 129.4 83 75.9
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 4.8e-27 125.6 214 38.3
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 7.6e-25 118.2 142 45.1
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.7e-24 117.1 83 67.5
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 2.9e-24 116.3 83 71.1
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.9e-24 116.3 133 48.1
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 1.1e-23 114.4 117 55.6
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.9e-23 113.6 128 50.8
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 9.3e-23 111.3 200 35.5
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 3.0e-21 106.3 75 72.0
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.7e-21 104.8 73 69.9
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.3e-19 100.9 83 60.2
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 2.8e-19 99.8 91 59.3
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 2.0e-17 93.6 106 48.1
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 1.7e-16 90.5 103 47.6
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 2.2e-16 90.1 83 51.8
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 5.0e-16 89.0 83 53.0
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 6.7e-13 78.6 89 48.3
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 2.0e-12 77.0 94 47.9
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.8e-11 73.2 64 54.7
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 6.3e-11 72.0 58 58.6
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 2.0e-09 67.0 228 26.3
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.6e-09 66.6 67 52.2
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 2.6e-09 66.6 47 70.2
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 7.7e-09 65.1 197 26.9
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.7e-08 63.9 65 52.3
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 2.9e-08 63.2 91 41.8
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 5.5e-07 58.9 61 50.8
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.1e-06 57.0 197 25.4
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 2.1e-06 57.0 35 74.3


User provided reference genes

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