Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 4.9e-67 257.7 132 100.0
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 9.9e-60 233.4 130 90.8
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 9.6e-55 216.9 130 81.5
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 2.8e-54 215.3 137 82.5
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 3.2e-50 201.8 131 82.4
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 5.5e-50 201.1 130 80.8
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 1.6e-49 199.5 129 79.8
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 3.5e-49 198.4 129 79.1
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 3.5e-49 198.4 129 79.1
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 3.0e-48 195.3 131 77.1
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 3.0e-48 195.3 131 77.1
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 9.6e-47 190.3 127 77.2
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 9.6e-47 190.3 127 77.2
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 2.0e-44 182.6 137 71.5
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 3.1e-37 158.7 128 64.1
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 1.2e-36 156.8 128 64.8
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 1.2e-36 156.8 130 65.4
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 1.0e-35 153.7 133 63.2
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 1.3e-35 153.3 131 65.6
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 5.0e-35 151.4 131 63.4
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 6.5e-35 151.0 132 60.6
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 6.5e-35 151.0 123 64.2
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 8.5e-35 150.6 134 62.7
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 1.9e-34 149.4 128 59.4
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 2.5e-34 149.1 115 67.8
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 3.2e-34 148.7 136 59.6
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 5.5e-34 147.9 132 62.1
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 7.2e-34 147.5 134 61.2
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 7.2e-34 147.5 134 61.2
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 9.3e-34 147.1 135 63.0
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 9.3e-34 147.1 119 64.7
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 1.6e-33 146.4 140 59.3
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 2.1e-33 146.0 132 62.1
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 2.1e-33 146.0 119 63.9
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 2.7e-33 145.6 137 61.3
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 2.7e-33 145.6 131 61.8
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 3.6e-33 145.2 136 62.5
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 3.6e-33 145.2 136 61.0
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 6.1e-33 144.4 127 62.2
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 1.0e-32 143.7 132 61.4
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 1.0e-32 143.7 132 61.4
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 1.8e-32 142.9 131 62.6
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 5.1e-32 141.4 128 60.2
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 5.1e-32 141.4 128 61.7
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 6.7e-32 141.0 118 62.7
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 6.7e-32 141.0 130 60.0
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 8.7e-32 140.6 116 63.8
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 8.7e-32 140.6 116 63.8
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 1.5e-31 139.8 130 61.5
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.5e-31 139.8 126 61.9
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 1.5e-31 139.8 136 57.4
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 1.5e-31 139.8 130 60.0
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 2.5e-31 139.0 123 61.8
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 3.3e-31 138.7 128 60.9
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 4.3e-31 138.3 129 58.9
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 4.3e-31 138.3 137 57.7
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 7.4e-31 137.5 137 56.2
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 2.2e-30 136.0 127 63.0
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 2.8e-30 135.6 132 58.3
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 3.7e-30 135.2 124 60.5
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 4.8e-30 134.8 124 60.5
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 4.8e-30 134.8 129 55.0
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 4.8e-30 134.8 116 60.3
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 6.3e-30 134.4 142 56.3
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 6.3e-30 134.4 130 58.5
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 6.3e-30 134.4 114 64.0
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.1e-29 133.7 124 60.5
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 1.8e-29 132.9 130 57.7
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 2.4e-29 132.5 124 58.1
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 5.3e-29 131.3 123 57.7
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 2.0e-28 129.4 131 56.5
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 4.5e-28 128.3 138 52.9
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 5.9e-28 127.9 129 55.8
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 5.9e-28 127.9 126 56.3
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 1.7e-27 126.3 96 68.8
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 1.7e-27 126.3 120 59.2
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 2.2e-27 125.9 137 54.0
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 3.8e-27 125.2 136 53.7
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 3.8e-27 125.2 133 54.1
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 1.1e-26 123.6 104 62.5
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 2.5e-26 122.5 116 55.2
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 5.5e-26 121.3 120 56.7
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 5.5e-26 121.3 118 58.5
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 9.4e-26 120.6 136 53.7
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 9.4e-26 120.6 111 56.8
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 1.6e-25 119.8 107 60.7
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 1.6e-25 119.8 127 53.5
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 2.7e-25 119.0 108 59.3
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 3.6e-25 118.6 91 64.8
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 3.6e-25 118.6 104 60.6
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 3.0e-24 115.5 105 61.9
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 6.7e-24 114.4 125 52.0
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 8.8e-24 114.0 126 50.8
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 7.4e-23 110.9 121 54.5
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 1.5e-20 103.2 96 54.2
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 2.5e-18 95.9 130 42.3
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 2.8e-14 82.4 117 41.0
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 2.6e-12 75.9 82 46.3
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 8.0e-09 64.3 85 47.1
AagrBONN_evm.TU.Sc2ySwM_362.657 Anthoceros agrestis HOM05D020496 ORTHO05D009197 4.4e-07 58.5 147 32.7
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 5.7e-07 58.2 85 38.8
DCAR_013720 Daucus carota HOM05D000789 ORTHO05D000897 6.3e-06 54.7 91 35.2
Sp6g12670 Schrenkiella parvula HOM05D000789 ORTHO05D000897 6.3e-06 54.7 108 38.0
Duzib268G1108 Durio zibethinus HOM05D000789 ORTHO05D000897 8.2e-06 54.3 102 37.3


User provided reference genes

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