Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 1.1e-119 433.3 232 100.0
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 2.0e-111 406.0 233 94.0
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 7.0e-109 397.5 232 90.9
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 1.2e-103 380.2 232 87.5
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 1.2e-103 380.2 232 87.5
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 1.2e-103 380.2 232 87.5
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 1.4e-101 373.2 233 86.3
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 1.4e-101 373.2 236 87.3
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 3.1e-101 372.1 225 88.0
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 1.1e-98 363.6 235 85.1
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 1.5e-98 363.2 233 85.0
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 7.0e-93 344.4 225 84.4
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 3.5e-68 262.3 223 66.8
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 1.2e-52 210.7 156 76.9
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.6e-47 193.0 229 51.1
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 3.8e-46 189.1 228 48.7
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 3.8e-46 189.1 228 50.9
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 3.8e-46 189.1 228 47.4
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 6.4e-46 188.3 228 48.7
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 8.4e-46 188.0 228 50.4
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 1.1e-45 187.6 228 50.4
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 4.2e-45 185.7 227 47.6
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 1.2e-44 184.1 228 48.2
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 1.3e-43 180.6 228 48.7
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 3.9e-43 179.1 246 45.5
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 6.7e-43 178.3 227 48.5
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 1.5e-42 177.2 241 47.7
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 1.5e-42 177.2 228 45.6
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 2.5e-42 176.4 235 47.2
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 3.3e-42 176.0 231 46.8
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 7.4e-42 174.9 229 47.2
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 1.3e-41 174.1 227 49.8
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 1.3e-41 174.1 238 46.2
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 1.3e-41 174.1 240 47.1
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 1.3e-41 174.1 228 46.1
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 1.6e-41 173.7 231 46.3
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 2.1e-41 173.3 227 44.9
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 2.8e-41 172.9 226 47.3
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 2.8e-41 172.9 230 48.7
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 4.8e-41 172.2 237 44.7
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 8.1e-41 171.4 228 44.7
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 1.1e-40 171.0 247 44.9
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 1.4e-40 170.6 237 47.3
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 3.1e-40 169.5 228 43.0
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 5.3e-40 168.7 237 46.4
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 6.9e-40 168.3 224 46.9
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 9.0e-40 167.9 247 42.9
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 9.0e-40 167.9 225 43.1
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 1.2e-39 167.5 237 43.9
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 1.5e-39 167.2 247 43.3
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 1.5e-39 167.2 235 44.3
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 1.5e-39 167.2 235 44.3
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 1.5e-39 167.2 226 46.5
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 2.0e-39 166.8 228 47.4
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 3.4e-39 166.0 233 45.1
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 9.9e-39 164.5 228 42.1
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 1.3e-38 164.1 247 44.9
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 1.3e-38 164.1 240 43.8
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 1.3e-38 164.1 240 43.8
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 1.3e-38 164.1 233 43.3
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 1.7e-38 163.7 195 47.7
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 1.7e-38 163.7 239 45.6
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 6.4e-38 161.8 237 43.9
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 8.4e-38 161.4 228 45.6
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 7.1e-37 158.3 293 38.2
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 1.6e-36 157.1 230 42.6
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 1.6e-36 157.1 238 46.2
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 1.6e-36 157.1 253 41.1
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 2.7e-36 156.4 253 39.9
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 6.0e-36 155.2 231 43.7
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 6.0e-36 155.2 242 42.1
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 3.0e-35 152.9 205 45.4
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 3.0e-35 152.9 254 42.9
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 5.1e-35 152.1 228 39.5
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 5.1e-35 152.1 235 44.3
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 1.5e-34 150.6 210 41.9
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 2.5e-34 149.8 238 44.5
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 2.5e-34 149.8 222 42.3
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 3.3e-34 149.4 265 42.6
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 9.6e-34 147.9 233 43.3
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 1.3e-33 147.5 228 41.7
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 1.6e-33 147.1 248 42.3
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 2.4e-32 143.3 202 43.6
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 3.1e-32 142.9 197 42.1
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 5.3e-32 142.1 235 43.8
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 5.3e-32 142.1 221 44.3
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 3.8e-30 136.0 217 41.9
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 4.9e-30 135.6 205 45.4
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 1.4e-29 134.0 228 41.7
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 1.9e-29 133.7 201 46.3
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 4.2e-29 132.5 228 39.9
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 5.1e-27 125.6 195 41.5
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 2.5e-26 123.2 143 49.7
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 1.4e-24 117.5 286 32.9
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 3.1e-24 116.3 102 56.9
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 4.1e-24 115.9 225 37.8
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 6.9e-24 115.2 196 37.2
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 3.4e-23 112.8 253 34.8
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 3.4e-23 112.8 103 56.3
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 4.5e-23 112.5 118 50.8
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 2.9e-22 109.8 98 60.2
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 5.0e-22 109.0 246 33.3
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 6.5e-22 108.6 98 58.2
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 6.5e-22 108.6 98 58.2
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 2.5e-21 106.7 96 54.2
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 1.2e-20 104.4 261 32.2
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 2.1e-20 103.6 111 53.2
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 7.4e-18 95.1 171 36.8
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 1.8e-16 90.5 260 32.3
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 5.9e-15 85.5 99 47.5
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 1.0e-14 84.7 163 38.0
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 2.2e-14 83.6 276 30.4
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 2.2e-14 83.6 163 37.4
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 1.4e-13 80.9 62 64.5
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 1.4e-13 80.9 245 28.2
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.9e-13 80.5 62 59.7
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 2.5e-13 80.1 62 61.3
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 3.2e-13 79.7 169 34.9
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 2.7e-12 76.6 50 70.0
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 1.4e-11 74.3 164 34.8
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 3.9e-11 72.8 165 38.8
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 1.1e-10 71.2 219 29.2
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 1.5e-10 70.9 98 43.9
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 4.4e-10 69.3 127 41.7
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 9.1e-08 61.6 135 35.6
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 1.2e-07 61.2 221 27.6
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.5e-07 60.8 129 37.2
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 2.6e-07 60.1 158 31.0
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 5.9e-07 58.9 62 50.0


User provided reference genes

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