Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 1.4e-229 799.3 398 100.0
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 1.7e-211 739.2 398 92.2
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 3.0e-200 701.8 398 86.9
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 7.1e-194 680.6 398 84.2
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 1.4e-186 656.4 398 81.4
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 4.6e-185 651.4 399 81.5
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 2.5e-183 645.6 398 81.2
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 2.5e-183 645.6 398 81.2
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 5.3e-165 584.7 393 75.6
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 1.7e-163 579.7 344 86.0
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 3.1e-149 532.3 342 79.2
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 5.5e-146 521.5 401 66.6
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 2.0e-143 513.1 332 78.6
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 6.3e-110 401.7 464 46.6
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 8.0e-105 384.8 461 45.8
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 1.0e-104 384.4 452 44.7
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 1.4e-104 384.0 475 45.1
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 1.8e-104 383.6 464 44.2
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 3.1e-104 382.9 464 44.2
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 5.2e-104 382.1 455 44.4
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 5.2e-104 382.1 455 44.4
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 8.9e-104 381.3 443 45.8
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 1.3e-102 377.5 456 43.9
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 7.0e-101 371.7 447 46.1
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 1.2e-100 370.9 464 42.0
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 2.3e-99 366.7 443 44.2
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 1.5e-98 364.0 453 43.0
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 1.9e-98 363.6 489 42.1
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 9.5e-98 361.3 452 43.4
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 9.5e-98 361.3 418 46.2
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 8.1e-97 358.2 457 41.4
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 2.3e-96 356.7 437 44.2
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 1.1e-93 347.8 459 41.4
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 1.1e-93 347.8 472 40.3
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 3.9e-91 339.3 492 40.0
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 5.1e-91 339.0 342 57.6
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.5e-90 336.7 430 43.0
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 9.5e-90 334.7 430 42.6
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 3.6e-89 332.8 450 42.0
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 4.7e-89 332.4 448 40.2
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 5.2e-88 328.9 456 39.7
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 6.8e-88 328.6 456 39.7
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 3.4e-87 326.2 460 39.3
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 1.3e-86 324.3 447 39.1
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.4e-85 320.9 411 43.6
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.2e-84 317.8 421 42.3
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 2.7e-84 316.6 463 40.4
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 3.3e-82 309.7 426 39.9
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 2.1e-81 307.0 404 41.3
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 8.4e-78 295.0 436 36.9
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 1.4e-77 294.3 463 38.7
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 1.9e-77 293.9 457 37.4
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 9.3e-77 291.6 432 37.7
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 3.0e-75 286.6 429 38.0
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 2.0e-71 273.9 376 41.8
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 5.8e-71 272.3 378 42.1
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 6.4e-70 268.9 399 37.8
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 1.1e-69 268.1 453 36.6
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 1.9e-69 267.3 458 35.4
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 6.6e-67 258.8 437 35.5
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 1.1e-66 258.1 448 34.8
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 1.4e-64 251.1 446 35.2
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 1.8e-64 250.8 445 35.1
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 9.9e-63 245.0 208 56.2
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 2.1e-60 237.3 455 33.4
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 6.7e-59 232.3 368 35.6
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 9.6e-58 228.4 324 39.2
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 7.6e-55 218.8 394 35.0
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 1.6e-52 211.1 276 40.9
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 1.0e-38 165.2 230 40.9
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 7.2e-37 159.1 252 37.7
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 2.9e-30 137.1 291 29.9
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 2.8e-25 120.6 89 57.3
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 1.1e-24 118.6 235 31.1
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 5.3e-24 116.3 125 43.2
C07p26600 Brassica napus HOM05D007808 ORTHO05D009895 8.5e-22 109.0 106 58.5
BraA06t27623Z Brassica rapa HOM05D007808 ORTHO05D009895 3.2e-21 107.1 110 59.1
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 8.8e-19 99.0 409 23.7
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 7.5e-18 95.9 231 29.9
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 2.2e-14 84.3 55 60.0
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.5e-13 81.6 54 59.3
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 6.8e-11 72.8 111 34.2
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 4.8e-09 66.6 45 62.2
SMO367G0912 Selaginella moellendorffii HOM05D007808 ORTHO05D009895 5.9e-07 59.7 202 25.7


User provided reference genes

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