Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 3.5e-61 238.0 115 100.0
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 3.9e-60 234.6 115 98.3
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 1.1e-57 226.5 115 96.5
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 3.8e-55 218.0 115 89.6
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 2.4e-54 215.3 115 89.6
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 2.4e-54 215.3 115 89.6
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 2.4e-54 215.3 115 89.6
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 5.4e-54 214.2 115 88.7
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 7.1e-54 213.8 115 90.4
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.1e-49 199.9 115 82.6
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 1.2e-48 196.4 103 90.3
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 4.2e-46 188.0 120 81.7
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 1.7e-44 182.6 99 87.9
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.0e-31 140.2 92 76.1
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.3e-28 129.8 109 58.7
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 1.8e-28 129.4 110 58.2
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 1.8e-28 129.4 110 58.2
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 2.3e-28 129.0 110 55.5
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 2.3e-28 129.0 110 55.5
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 2.3e-28 129.0 110 55.5
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 2.3e-28 129.0 110 58.2
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 2.3e-28 129.0 110 55.5
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 2.3e-28 129.0 110 55.5
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 2.3e-28 129.0 110 56.4
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 2.3e-28 129.0 114 58.8
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 3.9e-28 128.3 120 57.5
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 5.1e-28 127.9 110 57.3
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 5.1e-28 127.9 110 55.5
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 6.7e-28 127.5 110 57.3
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 6.7e-28 127.5 110 57.3
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 8.7e-28 127.1 110 56.4
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.1e-27 126.7 120 57.5
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.9e-27 125.9 108 55.6
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.3e-27 125.2 110 55.5
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.3e-27 125.2 110 55.5
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 2.8e-26 122.1 119 57.1
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 2.8e-26 122.1 119 57.1
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 2.8e-26 122.1 127 51.2
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 3.7e-26 121.7 108 56.5
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 6.3e-26 120.9 114 57.9
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 8.2e-26 120.6 124 54.0
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 1.1e-25 120.2 128 52.3
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 1.4e-25 119.8 119 54.6
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 1.8e-25 119.4 120 48.3
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 1.8e-25 119.4 120 50.0
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 3.1e-25 118.6 116 53.4
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 3.1e-25 118.6 125 51.2
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 3.1e-25 118.6 120 52.5
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 3.1e-25 118.6 116 54.3
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 6.9e-25 117.5 121 51.2
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 6.9e-25 117.5 121 51.2
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 9.0e-25 117.1 122 52.5
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 9.0e-25 117.1 114 54.4
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 9.0e-25 117.1 119 57.1
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.2e-24 116.7 127 49.6
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 2.0e-24 115.9 118 55.1
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 2.6e-24 115.5 124 48.4
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 2.6e-24 115.5 126 49.2
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 3.4e-24 115.2 114 53.5
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 3.4e-24 115.2 120 52.5
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 4.5e-24 114.8 127 52.8
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 5.9e-24 114.4 122 53.3
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 7.6e-24 114.0 106 57.5
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 7.6e-24 114.0 110 50.9
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 1.0e-23 113.6 126 50.0
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 1.3e-23 113.2 120 48.3
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 1.7e-23 112.8 131 48.9
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 1.7e-23 112.8 112 52.7
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 1.7e-23 112.8 120 50.8
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 2.2e-23 112.5 125 52.0
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 2.9e-23 112.1 102 55.9
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 2.9e-23 112.1 120 53.3
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 3.8e-23 111.7 118 54.2
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 5.0e-23 111.3 126 48.4
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 8.4e-23 110.5 123 50.4
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 8.4e-23 110.5 119 51.3
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 8.4e-23 110.5 121 50.4
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 8.4e-23 110.5 116 54.3
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 1.1e-22 110.2 122 49.2
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 1.4e-22 109.8 125 48.8
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 1.4e-22 109.8 125 48.8
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 1.9e-22 109.4 125 50.4
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.9e-22 109.4 134 46.3
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 2.5e-22 109.0 123 50.4
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 2.5e-22 109.0 119 50.4
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 3.2e-22 108.6 121 48.8
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 3.2e-22 108.6 130 46.9
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 3.2e-22 108.6 122 49.2
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 3.2e-22 108.6 123 50.4
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 4.2e-22 108.2 116 53.4
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 4.2e-22 108.2 116 53.4
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 4.2e-22 108.2 122 51.6
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 5.5e-22 107.8 130 49.2
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 5.5e-22 107.8 122 50.0
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 7.2e-22 107.5 121 47.9
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 9.3e-22 107.1 124 50.0
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.2e-21 106.7 116 47.4
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 1.6e-21 106.3 114 50.9
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 2.1e-21 105.9 121 48.8
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.7e-21 105.5 124 46.8
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 2.7e-21 105.5 116 49.1
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 2.7e-21 105.5 117 51.3
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 2.7e-21 105.5 116 50.9
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 3.5e-21 105.1 121 48.8
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 4.6e-21 104.8 122 50.0
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 4.6e-21 104.8 109 52.3
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 4.6e-21 104.8 123 52.0
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 6.1e-21 104.4 126 46.8
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 6.1e-21 104.4 120 50.0
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 7.9e-21 104.0 108 50.9
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 7.9e-21 104.0 111 50.5
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 7.9e-21 104.0 122 47.5
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 1.8e-20 102.8 124 43.5
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.3e-20 102.4 127 48.0
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 2.3e-20 102.4 116 49.1
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 2.3e-20 102.4 116 49.1
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 3.0e-20 102.1 120 47.5
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 3.0e-20 102.1 119 49.6
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 3.9e-20 101.7 130 47.7
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 3.9e-20 101.7 121 49.6
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 5.1e-20 101.3 128 45.3
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 5.1e-20 101.3 129 45.0
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 5.1e-20 101.3 123 46.3
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 6.7e-20 100.9 119 47.1
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 6.7e-20 100.9 124 45.2
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 6.7e-20 100.9 123 48.0
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 6.7e-20 100.9 119 47.9
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 6.7e-20 100.9 119 47.9
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 6.7e-20 100.9 101 56.4
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 6.7e-20 100.9 127 46.5
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 6.7e-20 100.9 123 46.3
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 8.7e-20 100.5 119 47.9
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 8.7e-20 100.5 114 47.4
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 1.1e-19 100.1 104 52.9
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 1.5e-19 99.8 120 49.2
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.9e-19 99.4 121 44.6
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 1.9e-19 99.4 122 44.3
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 3.3e-19 98.6 67 67.2
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 3.3e-19 98.6 117 48.7
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 4.3e-19 98.2 123 44.7
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 4.3e-19 98.2 112 50.0
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 5.7e-19 97.8 120 44.2
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 7.4e-19 97.4 110 48.2
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 7.4e-19 97.4 110 48.2
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 7.4e-19 97.4 121 45.5
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.3e-18 96.7 111 51.4
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 2.2e-18 95.9 129 45.7
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 2.2e-18 95.9 122 42.6
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 2.2e-18 95.9 122 42.6
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 2.2e-18 95.9 122 42.6
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 2.2e-18 95.9 128 45.3
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 4.8e-18 94.7 106 49.1
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 4.8e-18 94.7 139 42.4
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 1.1e-17 93.6 118 42.4
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 1.1e-17 93.6 112 48.2
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 2.4e-17 92.4 106 51.9
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 3.1e-17 92.0 111 49.5
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 3.1e-17 92.0 119 40.3
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 3.1e-17 92.0 110 43.6
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 5.3e-17 91.3 126 44.4
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 5.3e-17 91.3 109 47.7
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 6.9e-17 90.9 117 41.9
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 9.0e-17 90.5 115 45.2
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 2.6e-16 89.0 113 46.0
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 4.5e-16 88.2 125 40.8
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 7.7e-16 87.4 110 44.5
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 1.0e-15 87.0 112 46.4
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 1.0e-15 87.0 105 46.7
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 1.3e-15 86.7 114 49.1
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 7.2e-14 80.9 100 47.0
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.6e-13 79.7 150 34.7
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 1.5e-11 73.2 96 44.8
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 3.3e-11 72.0 112 37.5
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 5.7e-11 71.2 159 33.3
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 1.7e-10 69.7 76 52.6
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 2.2e-10 69.3 142 32.4
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 4.8e-10 68.2 151 34.4
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 6.3e-10 67.8 121 39.7
Pp3c24_1050 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.7e-07 59.7 153 31.4
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 5.0e-07 58.2 120 34.2
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 5.5e-06 54.7 121 33.9
Pp3c10_24000 Physcomitrium patens HOM05D003630 ORTHO05D004151 9.4e-06 53.9 159 30.2


User provided reference genes

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