Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 2.6e-163 578.6 277 100.0
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 3.2e-153 545.0 277 93.1
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 7.2e-153 543.9 279 92.8
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 8.8e-151 537.0 277 92.1
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.5e-150 536.2 277 92.1
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.6e-150 535.4 277 91.7
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 3.3e-150 535.0 277 92.4
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 6.3e-149 530.8 277 91.0
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 6.3e-149 530.8 277 91.3
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.4e-148 529.6 277 91.0
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.4e-148 529.6 277 91.0
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.4e-148 529.6 277 91.0
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 5.3e-148 527.7 275 91.3
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.6e-147 526.2 278 91.0
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.6e-147 526.2 278 91.0
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.7e-146 522.7 278 90.6
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.7e-146 522.7 278 90.6
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 7.2e-145 517.3 277 89.5
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 7.2e-137 490.7 277 84.1
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 3.2e-124 448.7 280 75.0
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 5.9e-123 444.5 280 74.6
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.3e-122 443.4 280 74.3
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 3.9e-122 441.8 280 75.0
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.9e-121 439.5 280 73.9
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 6.8e-119 431.0 284 72.5
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.5e-118 429.9 282 74.1
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 5.8e-118 427.9 281 71.5
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 1.3e-117 426.8 280 71.1
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 2.9e-117 425.6 280 73.2
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 2.0e-115 419.5 284 71.1
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.0e-115 419.5 280 71.8
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 2.0e-115 419.5 280 72.9
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.3e-114 416.8 276 70.3
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 8.6e-114 414.1 280 70.4
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.1e-113 413.7 282 72.3
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.9e-113 412.9 282 68.8
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 2.5e-113 412.5 281 70.1
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 4.3e-113 411.8 281 70.5
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 2.8e-112 409.1 322 64.6
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 4.7e-112 408.3 282 70.6
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 8.1e-112 407.5 279 68.8
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 6.8e-111 404.4 280 70.0
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.2e-110 403.7 280 67.9
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 2.6e-110 402.5 280 67.9
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 2.6e-110 402.5 281 68.3
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 9.8e-110 400.6 283 68.6
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 9.8e-110 400.6 283 68.6
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.3e-109 400.2 204 95.6
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.7e-109 399.8 280 67.5
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 3.7e-109 398.7 280 67.9
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 6.4e-109 397.9 280 68.2
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 6.4e-109 397.9 280 67.9
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 8.3e-109 397.5 281 68.3
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.9e-108 396.4 280 67.5
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 2.4e-108 396.0 289 65.4
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 2.4e-108 396.0 279 67.0
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 3.2e-108 395.6 280 67.1
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 7.1e-108 394.4 277 67.5
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 9.2e-108 394.0 280 65.0
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 2.1e-107 392.9 280 66.4
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 2.7e-107 392.5 280 66.8
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 4.6e-107 391.7 277 67.1
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.3e-106 390.2 268 66.8
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 3.0e-106 389.0 281 65.1
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 5.1e-106 388.3 278 65.8
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.9e-105 386.3 280 65.0
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.9e-105 386.3 280 66.1
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.9e-105 386.3 278 67.3
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 7.3e-105 384.4 290 63.8
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 9.5e-105 384.0 280 68.6
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 2.8e-104 382.5 279 65.2
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 6.2e-104 381.3 278 64.7
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 1.3e-101 373.6 286 64.7
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.7e-101 373.2 281 65.5
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 8.4e-101 370.9 284 61.6
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 8.4e-101 370.9 284 61.6
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 8.4e-101 370.9 238 74.4
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 1.4e-100 370.2 278 64.4
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.6e-99 366.7 262 67.2
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 6.0e-99 364.8 238 74.4
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.0e-98 364.0 312 58.0
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.3e-97 358.6 392 49.0
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 7.3e-97 357.8 301 58.5
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 3.6e-96 355.5 236 72.0
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 1.1e-95 354.0 280 63.2
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 4.0e-95 352.1 354 51.4
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 1.5e-94 350.1 283 59.4
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 2.6e-94 349.4 273 62.6
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.2e-93 346.3 385 48.6
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 4.2e-92 342.0 308 54.5
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.0e-90 337.4 281 61.6
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 6.6e-90 334.7 322 53.7
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.5e-89 332.8 282 61.3
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.3e-89 332.0 282 61.3
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 8.1e-88 327.8 289 57.8
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 6.9e-87 324.7 270 58.9
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.2e-86 323.9 280 58.6
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 7.6e-86 321.2 256 59.0
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 1.4e-84 317.0 237 64.6
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 4.6e-75 285.4 275 53.8
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.0e-74 284.3 228 60.5
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.1e-73 280.8 186 70.4
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 7.4e-73 278.1 188 68.6
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 8.1e-72 274.6 269 50.9
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.1e-71 274.2 325 47.7
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 2.4e-71 273.1 304 46.7
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 5.8e-70 268.5 187 66.8
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 1.3e-69 267.3 187 66.8
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 1.8e-63 246.9 253 48.2
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 3.6e-59 232.6 257 44.7
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 8.7e-58 228.0 142 73.9
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 2.2e-56 223.4 200 57.0
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 4.1e-55 219.2 254 43.7
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.6e-54 216.5 191 59.2
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.0e-41 173.7 91 89.0
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 6.5e-37 158.7 114 65.8
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 6.5e-37 158.7 114 65.8
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.7e-35 153.3 117 67.5
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 1.3e-29 134.4 95 68.4
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 3.2e-28 129.8 95 68.4
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 5.5e-28 129.0 93 63.4
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.2e-27 127.9 90 64.4
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 5.2e-26 122.5 97 58.8
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 6.8e-26 122.1 82 70.7
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 1.5e-25 120.9 66 87.9
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 3.4e-25 119.8 94 58.5
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 4.8e-24 115.9 75 72.0
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 3.5e-22 109.8 94 59.6
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 7.7e-22 108.6 112 48.2
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 3.6e-19 99.8 61 70.5
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 4.7e-19 99.4 100 50.0
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 1.8e-18 97.4 62 69.4
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.5e-17 94.4 51 80.4
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 4.9e-16 89.4 49 73.5
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 7.3e-12 75.5 57 61.4
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.0e-11 72.0 46 69.6
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.8e-10 70.9 38 76.3
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 8.9e-10 68.6 65 55.4
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 2.6e-09 67.0 35 74.3
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 5.7e-09 65.9 33 78.8
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 5.7e-09 65.9 33 78.8
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 2.4e-07 60.5 55 45.5


User provided reference genes

Program Settings