Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G14960 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 7.0e-47 190.3 96 100.0
AT1G33400 Arabidopsis thaliana HOM05D005592 ORTHO05D006067 8.0e-43 176.8 96 92.7
CARHR032830 Cardamine hirsuta HOM05D005592 ORTHO05D006067 3.0e-42 174.9 94 93.6
AL1G47780 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 7.5e-41 170.2 96 89.6
Carub.0001s3159 Capsella rubella HOM05D005592 ORTHO05D006067 9.8e-41 169.9 93 90.3
Sp1g28850 Schrenkiella parvula HOM05D005592 ORTHO05D006067 9.2e-39 163.3 92 89.1
BcaB03g13702 Brassica carinata HOM05D005592 ORTHO05D006067 3.5e-38 161.4 94 85.1
A05p24340 Brassica napus HOM05D005592 ORTHO05D006067 4.5e-38 161.0 92 87.0
BraA05t21327Z Brassica rapa HOM05D005592 ORTHO05D006067 4.5e-38 161.0 92 87.0
BcaC05g27807 Brassica carinata HOM05D005592 ORTHO05D006067 2.3e-37 158.7 92 85.9
C05p38090 Brassica napus HOM05D005592 ORTHO05D006067 2.3e-37 158.7 92 85.9
BolC5t32537H Brassica oleracea HOM05D005592 ORTHO05D006067 2.3e-37 158.7 92 85.9
Thhalv10006832m.g Eutrema salsugineum HOM05D005592 ORTHO05D006067 1.5e-36 156.0 86 89.5
AL8G14970 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 2.1e-35 152.1 79 97.5
Aa31LG6G7910 Aethionema arabicum HOM05D005592 ORTHO05D006067 2.3e-34 148.7 94 75.5
THA.LOC104813079 Tarenaya hassleriana HOM05D005592 ORTHO05D006067 9.8e-25 116.7 91 67.0
TAR369G0313 Trochodendron aralioides HOM05D005592 ORTHO05D006067 1.5e-20 102.8 85 58.8
Lj1C971G13 Lonicera japonica HOM05D005592 ORTHO05D006067 8.1e-19 97.1 91 53.8
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 1.1e-18 96.7 85 52.9
Hma1.2p1_0264F.1_g105700 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 8.9e-18 93.6 85 56.5
Hma1.2p1_0264F.1_g105710 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 8.9e-18 93.6 85 56.5
PSO339G4695 Papaver somniferum HOM05D005592 ORTHO05D006067 2.0e-17 92.4 90 50.0
Nn5g26734 Nelumbo nucifera HOM05D005592 ORTHO05D006067 3.4e-17 91.7 83 57.8
Migut.F00557 Erythranthe guttata HOM05D005592 ORTHO05D006067 7.6e-17 90.5 78 55.1
DCAR_018065 Daucus carota HOM05D005592 ORTHO05D006067 9.9e-17 90.1 85 55.3
Manes.18G121600 Manihot esculenta HOM05D005592 ORTHO05D006067 1.3e-16 89.7 83 53.0
AUR62031675 Chenopodium quinoa HOM05D005592 ORTHO05D006067 1.7e-16 89.4 78 55.1
Actinidia13627 Actinidia chinensis HOM05D005592 ORTHO05D006067 2.2e-16 89.0 85 55.3
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 2.2e-16 89.0 88 53.4
COL.COLO4_19504 Corchorus olitorius HOM05D005592 ORTHO05D006067 2.2e-16 89.0 86 53.5
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 2.9e-16 88.6 82 54.9
Hund15772 Selenicereus undatus HOM05D005592 ORTHO05D006067 2.9e-16 88.6 87 51.7
Lsat_1_v5_gn_9_60521 Lactuca sativa HOM05D005592 ORTHO05D006067 3.7e-16 88.2 78 52.6
EL10Ac2g02700 Beta vulgaris HOM05D005592 ORTHO05D006067 8.3e-16 87.0 91 48.4
CAN.G1151.3 Capsicum annuum HOM05D005592 ORTHO05D006067 8.3e-16 87.0 83 50.6
SalBow3G4308 Salvia bowleyana HOM05D005592 ORTHO05D006067 8.3e-16 87.0 87 46.0
ClCG03G006970 Citrullus lanatus HOM05D005592 ORTHO05D006067 1.1e-15 86.7 85 49.4
Peaxi162Scf00073g02027 Petunia axillaris HOM05D005592 ORTHO05D006067 1.1e-15 86.7 80 52.5
Nitab4.5_0001130g0030 Nicotiana tabacum HOM05D005592 ORTHO05D006067 1.4e-15 86.3 80 51.2
Oeu008098.1 Olea europaea HOM05D005592 ORTHO05D006067 1.9e-15 85.9 81 51.9
CANSAT56G3301 Cannabis sativa HOM05D005592 ORTHO05D006067 2.4e-15 85.5 85 52.9
Cc02_g04980 Coffea canephora HOM05D005592 ORTHO05D006067 2.4e-15 85.5 85 51.8
Duzib066G0005 Durio zibethinus HOM05D005592 ORTHO05D006067 3.2e-15 85.1 81 55.6
TWI75G0267 Tripterygium wilfordii HOM05D005592 ORTHO05D006067 3.2e-15 85.1 87 51.7
ECA232G3941 Erigeron canadensis HOM05D005592 ORTHO05D006067 1.2e-14 83.2 78 55.1
Eucgr.H00237 Eucalyptus grandis HOM05D005592 ORTHO05D006067 1.2e-14 83.2 87 51.7
HanXRQChr09g0252351 Helianthus annuus HOM05D005592 ORTHO05D006067 1.2e-14 83.2 81 50.6
Nitab4.5_0000103g0070 Nicotiana tabacum HOM05D005592 ORTHO05D006067 1.2e-14 83.2 80 50.0
FAN01G0671 Fragaria x ananassa HOM05D005592 ORTHO05D006067 1.6e-14 82.8 82 53.7
RcHm_v2.0_Chr1g0372931 Rosa chinensis HOM05D005592 ORTHO05D006067 1.6e-14 82.8 82 54.9
Sed0013074 Sechium edule HOM05D005592 ORTHO05D006067 1.6e-14 82.8 85 49.4
vmacro06869 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 1.6e-14 82.8 83 53.0
MELO3C002725.2 Cucumis melo HOM05D005592 ORTHO05D006067 2.1e-14 82.4 85 48.2
FAN03G0809 Fragaria x ananassa HOM05D005592 ORTHO05D006067 2.1e-14 82.4 82 53.7
Prupe.2G267900 Prunus persica HOM05D005592 ORTHO05D006067 2.1e-14 82.4 91 49.5
Rhsim03G0155100 Rhododendron simsii HOM05D005592 ORTHO05D006067 2.1e-14 82.4 83 50.6
CsaV3_1G032540 Cucumis sativus L. HOM05D005592 ORTHO05D006067 2.7e-14 82.0 85 48.2
FvH4_7g26380 Fragaria vesca HOM05D005592 ORTHO05D006067 2.7e-14 82.0 82 52.4
Ah.10g029720 Amaranthus hybridus HOM05D005592 ORTHO05D006067 3.5e-14 81.6 84 47.6
AUR62032559 Chenopodium quinoa HOM05D005592 ORTHO05D006067 3.5e-14 81.6 80 50.0
Zm00001eb044040 Zea mays HOM05D005592 ORTHO05D006067 3.5e-14 81.6 79 48.1
Gorai.013G010300 Gossypium raimondii HOM05D005592 ORTHO05D006067 4.6e-14 81.3 87 48.3
Psat5g070400 Pisum sativum HOM05D005592 ORTHO05D006067 4.6e-14 81.3 82 48.8
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 6.0e-14 80.9 93 50.5
Sopen03g025240 Solanum pennellii HOM05D005592 ORTHO05D006067 6.0e-14 80.9 80 50.0
HPP92_022562 Vanilla planifolia HOM05D005592 ORTHO05D006067 6.0e-14 80.9 83 44.6
Gohir.D13G009600 Gossypium hirsutum HOM05D005592 ORTHO05D006067 7.8e-14 80.5 87 48.3
TPR.G13972 Trifolium pratense HOM05D005592 ORTHO05D006067 7.8e-14 80.5 82 48.8
CDE04G0667 Ceratophyllum demersum HOM05D005592 ORTHO05D006067 2.3e-13 79.0 80 48.8
Thecc.10G188900 Theobroma cacao HOM05D005592 ORTHO05D006067 2.3e-13 79.0 81 51.9
Medtr3g093440 Medicago truncatula HOM05D005592 ORTHO05D006067 3.0e-13 78.6 82 46.3
Cfa001174 Carpinus fangiana HOM05D005592 ORTHO05D006067 5.1e-13 77.8 85 47.1
Glyma.04G225100 Glycine max HOM05D005592 ORTHO05D006067 5.1e-13 77.8 85 45.9
Glyma.06G139600 Glycine max HOM05D005592 ORTHO05D006067 5.1e-13 77.8 85 45.9
CSS0024281 Camellia sinensis var. sinensis HOM05D005592 ORTHO05D006067 6.6e-13 77.4 71 54.9
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 8.6e-13 77.0 81 49.4
Gohir.A13G008900 Gossypium hirsutum HOM05D005592 ORTHO05D006067 8.6e-13 77.0 87 46.0
VMungo1309G2865 Vigna mungo HOM05D005592 ORTHO05D006067 1.1e-12 76.6 85 48.2
Lalb_Chr23g0272061 Lupinus albus HOM05D005592 ORTHO05D006067 1.5e-12 76.3 85 47.1
Ca_16843_v3 Cicer arietinum L. HOM05D005592 ORTHO05D006067 3.3e-12 75.1 82 45.1
unitig_37.g12479 Utricularia gibba HOM05D005592 ORTHO05D006067 3.3e-12 75.1 73 45.2
Os10g0506800 Oryza sativa ssp. japonica HOM05D005592 ORTHO05D006067 5.6e-12 74.3 83 42.2
Potri.016G144200 Populus trichocarpa HOM05D005592 ORTHO05D006067 5.6e-12 74.3 76 51.3
Sabra04G0160100 Salix brachista HOM05D005592 ORTHO05D006067 7.3e-12 73.9 76 51.3
Lj1g0017160 Lotus japonicus HOM05D005592 ORTHO05D006067 1.2e-11 73.2 80 46.2
Phvul.009G040900 Phaseolus vulgaris HOM05D005592 ORTHO05D006067 2.8e-11 72.0 85 45.9
PGR083G1109 Punica granatum HOM05D005592 ORTHO05D006067 6.2e-11 70.9 86 41.9
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 3.1e-10 68.6 70 50.0
ATR1126G052 Amborella trichopoda HOM05D005592 ORTHO05D006067 2.0e-09 65.9 85 38.8
Prupe.1G112400 Prunus persica HOM05D005592 ORTHO05D006067 5.8e-09 64.3 67 50.7
CiPaw.01G308100 Carya illinoinensis HOM05D005592 ORTHO05D006067 1.9e-07 59.3 47 59.6
Dinv21875 Davidia involucrata HOM05D005592 ORTHO05D006067 7.1e-07 57.4 63 47.6
SHI08066 Sapria himalayana HOM05D005592 ORTHO05D006067 7.1e-07 57.4 70 40.0
Cpa.g.sc41.42 Carica papaya HOM05D005592 ORTHO05D006067 1.2e-06 56.6 68 51.5


User provided reference genes

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