Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 8.4e-24 113.2 74 100.0
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 6.2e-19 97.1 75 90.7
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 1.4e-18 95.9 74 86.5
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 5.3e-18 94.0 74 83.8
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 7.6e-17 90.1 74 86.5
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 7.6e-17 90.1 74 81.1
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 1.3e-16 89.4 74 81.1
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.1e-15 86.3 74 74.3
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 1.1e-15 86.3 74 77.0
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.4e-15 85.1 73 79.5
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 4.2e-15 84.3 72 73.6
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 5.4e-15 84.0 73 72.6
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 7.1e-15 83.6 74 75.7
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 7.1e-15 83.6 72 76.4
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 7.1e-15 83.6 72 73.6
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 73.6
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 73.6
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 73.6
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 73.6
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 1.2e-14 82.8 74 83.8
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 1.6e-14 82.4 72 75.0
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.6e-14 82.4 72 75.0
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.6e-14 82.4 74 74.3
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.6e-14 82.4 74 71.6
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.1e-14 82.0 73 67.1
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.7e-14 81.6 74 75.7
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 2.7e-14 81.6 68 79.4
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.7e-14 81.6 74 70.3
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 3.5e-14 81.3 74 70.3
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 6.0e-14 80.5 74 74.3
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 7.9e-14 80.1 75 76.0
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 7.9e-14 80.1 75 76.0
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 7.9e-14 80.1 75 76.0
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 7.9e-14 80.1 75 76.0
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 7.9e-14 80.1 74 71.6
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.0e-13 79.7 74 73.0
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.0e-13 79.7 74 73.0
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 1.8e-13 79.0 74 73.0
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.8e-13 79.0 74 74.3
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 1.8e-13 79.0 74 70.3
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 1.8e-13 79.0 74 70.3
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.8e-13 79.0 73 61.6
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 2.3e-13 78.6 74 70.3
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.3e-13 78.6 74 67.6
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 3.0e-13 78.2 116 58.6
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 3.0e-13 78.2 71 69.0
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.9e-13 77.8 74 74.3
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 3.9e-13 77.8 74 67.6
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 3.9e-13 77.8 70 70.0
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 3.9e-13 77.8 72 72.2
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 5.1e-13 77.4 74 68.9
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 5.1e-13 77.4 74 70.3
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 6.7e-13 77.0 75 74.7
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 6.7e-13 77.0 74 70.3
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 8.7e-13 76.6 74 63.5
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 8.7e-13 76.6 74 63.5
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.1e-12 76.3 74 75.7
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 1.1e-12 76.3 74 75.7
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.1e-12 76.3 74 75.7
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.1e-12 76.3 74 62.2
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.5e-12 75.9 74 73.0
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.5e-12 75.9 74 73.0
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.9e-12 75.5 71 66.2
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.9e-12 75.5 71 66.2
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.9e-12 75.5 75 74.7
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 1.9e-12 75.5 71 76.1
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 2.5e-12 75.1 74 64.9
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 2.5e-12 75.1 74 62.2
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 3.3e-12 74.7 74 63.5
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 3.3e-12 74.7 71 66.2
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 4.3e-12 74.3 74 74.3
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 4.3e-12 74.3 74 74.3
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 4.3e-12 74.3 68 73.5
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 5.6e-12 73.9 74 71.6
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 5.6e-12 73.9 74 71.6
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 5.6e-12 73.9 74 71.6
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 7.4e-12 73.6 74 63.5
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 7.4e-12 73.6 74 60.8
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 9.6e-12 73.2 74 70.3
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.3e-11 72.8 71 70.4
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.3e-11 72.8 74 58.1
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 1.6e-11 72.4 71 71.8
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 2.1e-11 72.0 71 64.8
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 2.1e-11 72.0 71 71.8
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 3.7e-11 71.2 75 76.0
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 3.7e-11 71.2 69 72.5
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 3.7e-11 71.2 71 53.5
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 4.8e-11 70.9 74 66.2
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 6.2e-11 70.5 71 63.4
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 6.2e-11 70.5 72 69.4
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 6.2e-11 70.5 69 72.5
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 8.1e-11 70.1 71 64.8
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 8.1e-11 70.1 82 65.9
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 8.1e-11 70.1 74 70.3
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 1.1e-10 69.7 71 64.8
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 1.1e-10 69.7 71 64.8
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.1e-10 69.7 71 64.8
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 1.4e-10 69.3 75 74.7
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 1.4e-10 69.3 75 62.7
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 1.4e-10 69.3 72 62.5
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.8e-10 68.9 73 71.2
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 2.4e-10 68.6 71 57.7
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 3.1e-10 68.2 76 59.2
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 4.0e-10 67.8 74 60.8
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 4.0e-10 67.8 75 68.0
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 5.3e-10 67.4 76 69.7
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 5.3e-10 67.4 74 67.6
CARHR055420 Cardamine hirsuta HOM05D003549 ORTHO05D004223 9.0e-10 66.6 116 51.7
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 1.5e-09 65.9 72 68.1
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 2.0e-09 65.5 74 56.8
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 2.0e-09 65.5 72 70.8
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 2.6e-09 65.1 71 67.6
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 2.6e-09 65.1 73 61.6
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 3.4e-09 64.7 73 58.9
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 3.4e-09 64.7 71 57.7
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 4.5e-09 64.3 75 65.3
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 4.5e-09 64.3 47 74.5
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 5.8e-09 63.9 71 64.8
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 5.8e-09 63.9 71 64.8
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 1.0e-08 63.2 68 61.8
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 1.3e-08 62.8 48 68.8
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 1.3e-08 62.8 91 58.2
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 1.7e-08 62.4 74 59.5
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 2.2e-08 62.0 73 69.9
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.9e-08 61.6 72 62.5
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.9e-08 61.6 72 62.5
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.9e-08 61.6 72 62.5
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.9e-08 61.6 72 62.5
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 2.9e-08 61.6 71 64.8
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 3.8e-08 61.2 46 71.7
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 4.9e-08 60.8 74 67.6
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 4.9e-08 60.8 73 68.5
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 6.5e-08 60.5 72 62.5
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.5e-08 60.5 72 62.5
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 6.5e-08 60.5 71 67.6
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 8.4e-08 60.1 71 67.6
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 8.4e-08 60.1 67 64.2
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 2.5e-07 58.5 71 63.4
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 2.5e-07 58.5 74 67.6
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 5.5e-07 57.4 74 64.9
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 5.5e-07 57.4 77 58.4
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 5.5e-07 57.4 65 69.2
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 5.5e-07 57.4 68 52.9
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 7.1e-07 57.0 45 66.7
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.6e-06 55.8 65 67.7
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.6e-06 55.8 75 50.7
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 3.5e-06 54.7 66 56.1
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 4.6e-06 54.3 74 63.5


User provided reference genes

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