Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.8e-41 172.2 87 100.0
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 9.2e-30 133.3 75 90.7
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 9.2e-30 133.3 75 90.7
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 1.0e-28 129.8 75 88.0
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.5e-27 125.9 75 85.3
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 2.5e-27 125.2 75 85.3
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 2.5e-27 125.2 75 85.3
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 2.5e-27 125.2 75 85.3
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.5e-27 125.2 75 85.3
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 2.5e-27 125.2 75 85.3
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 2.5e-27 125.2 75 85.3
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 2.1e-26 122.1 75 82.7
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 4.7e-26 120.9 75 82.7
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.0e-20 103.2 67 77.6
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 3.9e-20 101.3 67 74.6
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 8.6e-20 100.1 75 68.0
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.9e-19 99.0 67 73.1
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 2.5e-19 98.6 67 70.1
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 3.3e-19 98.2 67 70.1
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 3.3e-19 98.2 75 62.7
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 4.3e-19 97.8 75 65.3
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 5.6e-19 97.4 67 71.6
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 7.3e-19 97.1 75 62.7
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 7.3e-19 97.1 75 62.7
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 7.3e-19 97.1 75 62.7
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 7.3e-19 97.1 67 71.6
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 7.3e-19 97.1 67 71.6
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 1.2e-18 96.3 61 77.0
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 1.2e-18 96.3 75 62.7
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 1.6e-18 95.9 75 62.7
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 1.6e-18 95.9 75 61.3
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 1.6e-18 95.9 84 59.5
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.6e-18 95.9 67 73.1
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.6e-18 95.9 67 70.1
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 1.6e-18 95.9 67 70.1
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 2.1e-18 95.5 67 71.6
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.1e-18 95.5 67 71.6
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.1e-18 95.5 67 71.6
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 2.1e-18 95.5 75 61.3
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 2.1e-18 95.5 67 68.7
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 2.8e-18 95.1 67 70.1
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 3.6e-18 94.7 67 67.2
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 3.6e-18 94.7 75 61.3
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 4.7e-18 94.4 67 71.6
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 4.7e-18 94.4 75 61.3
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 4.7e-18 94.4 67 68.7
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 6.2e-18 94.0 67 67.2
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 6.2e-18 94.0 67 70.1
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 8.1e-18 93.6 61 73.8
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 8.1e-18 93.6 63 71.4
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 8.1e-18 93.6 63 71.4
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 8.1e-18 93.6 67 68.7
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 1.1e-17 93.2 67 71.6
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 1.1e-17 93.2 75 62.7
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.1e-17 93.2 67 70.1
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.1e-17 93.2 67 68.7
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.1e-17 93.2 67 67.2
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.4e-17 92.8 67 68.7
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.4e-17 92.8 67 68.7
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 3.1e-17 91.7 67 67.2
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 3.1e-17 91.7 67 70.1
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 4.0e-17 91.3 67 68.7
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 4.0e-17 91.3 77 62.3
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 4.0e-17 91.3 67 68.7
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 4.0e-17 91.3 68 69.1
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 5.2e-17 90.9 67 67.2
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 6.8e-17 90.5 67 71.6
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 1.2e-16 89.7 67 65.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.0e-16 89.0 61 68.9
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 2.0e-16 89.0 61 70.5
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 2.0e-16 89.0 63 69.8
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 2.0e-16 89.0 67 65.7
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 2.0e-16 89.0 75 60.0
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 3.4e-16 88.2 67 67.2
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 4.4e-16 87.8 67 64.2
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 5.8e-16 87.4 67 64.2
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 5.8e-16 87.4 67 62.7
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 7.6e-16 87.0 67 64.2
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 7.6e-16 87.0 67 64.2
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 9.9e-16 86.7 63 69.8
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 1.7e-15 85.9 67 62.7
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 3.8e-15 84.7 59 69.5
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.8e-15 84.7 63 68.3
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 6.4e-15 84.0 60 68.3
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.1e-14 83.2 67 64.2
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 1.9e-14 82.4 60 63.3
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 7.1e-14 80.5 67 61.2
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 4.6e-13 77.8 50 74.0
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 1.3e-12 76.3 67 62.7
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.7e-12 75.9 68 57.4
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 2.3e-12 75.5 67 56.7
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 3.0e-12 75.1 67 58.2
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 6.6e-12 73.9 51 70.6
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 1.5e-11 72.8 50 66.0
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 3.3e-11 71.6 69 58.0
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 4.8e-10 67.8 51 66.7
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.4e-09 66.2 50 66.0
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.8e-09 65.9 50 66.0
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 2.4e-09 65.5 51 64.7
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.4e-08 61.6 49 65.3
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 3.4e-08 61.6 67 46.3
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 3.4e-08 61.6 67 46.3
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 5.8e-08 60.8 40 67.5
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 6.4e-07 57.4 74 40.5
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 1.4e-06 56.2 36 63.9
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 4.2e-06 54.7 39 64.1


User provided reference genes

Program Settings