Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 2.0e-55 218.8 105 100.0
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 2.7e-44 181.8 97 92.8
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 7.2e-21 104.0 53 88.7
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 3.6e-20 101.7 53 86.8
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 5.2e-19 97.8 53 81.1
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 1.2e-18 96.7 53 83.0
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 7.5e-18 94.0 53 79.2
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 1.7e-17 92.8 53 79.2
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 1.4e-16 89.7 53 75.5
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 1.4e-16 89.7 53 75.5
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 3.1e-16 88.6 53 73.6
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 3.1e-16 88.6 53 73.6
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 3.1e-16 88.6 53 73.6
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 5.4e-16 87.8 53 77.4
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 5.9e-15 84.3 50 76.0
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.9e-13 79.3 52 67.3
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 2.5e-13 79.0 53 64.2
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 3.2e-13 78.6 50 72.0
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 4.2e-13 78.2 52 65.4
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 4.2e-13 78.2 52 65.4
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 9.5e-13 77.0 54 61.1
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 1.2e-12 76.6 54 61.1
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 1.2e-12 76.6 52 65.4
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.6e-12 76.3 56 58.9
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 2.1e-12 75.9 54 59.3
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 2.1e-12 75.9 53 62.3
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 2.1e-12 75.9 52 61.5
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 2.1e-12 75.9 53 60.4
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 2.1e-12 75.9 53 62.3
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 2.7e-12 75.5 52 63.5
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 2.7e-12 75.5 54 59.3
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 3.6e-12 75.1 56 58.9
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 3.6e-12 75.1 56 58.9
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 3.6e-12 75.1 53 62.3
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 3.6e-12 75.1 53 62.3
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 3.6e-12 75.1 53 62.3
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 3.6e-12 75.1 53 62.3
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 3.6e-12 75.1 53 62.3
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 3.6e-12 75.1 56 58.9
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 4.7e-12 74.7 53 62.3
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 4.7e-12 74.7 54 59.3
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 6.1e-12 74.3 53 62.3
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 6.1e-12 74.3 53 60.4
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 8.0e-12 73.9 52 59.6
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 8.0e-12 73.9 54 61.1
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 8.0e-12 73.9 52 61.5
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.0e-11 73.6 54 57.4
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.0e-11 73.6 54 57.4
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 1.0e-11 73.6 54 59.3
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 1.0e-11 73.6 64 56.2
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 1.0e-11 73.6 52 63.5
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 1.4e-11 73.2 53 60.4
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 1.4e-11 73.2 50 60.0
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 1.4e-11 73.2 53 60.4
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 1.4e-11 73.2 53 58.5
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 1.4e-11 73.2 66 53.0
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 1.4e-11 73.2 53 60.4
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 1.8e-11 72.8 54 57.4
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 1.8e-11 72.8 56 57.1
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 2.3e-11 72.4 54 55.6
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 2.3e-11 72.4 54 57.4
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 2.3e-11 72.4 53 60.4
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 2.3e-11 72.4 54 57.4
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 3.0e-11 72.0 56 57.1
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 3.0e-11 72.0 56 58.9
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 3.0e-11 72.0 56 58.9
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 5.2e-11 71.2 53 58.5
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 5.2e-11 71.2 54 57.4
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 5.2e-11 71.2 56 57.1
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 5.2e-11 71.2 53 58.5
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 5.2e-11 71.2 56 58.9
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 6.8e-11 70.9 52 61.5
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 6.8e-11 70.9 52 61.5
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 8.8e-11 70.5 56 55.4
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 8.8e-11 70.5 56 55.4
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 1.2e-10 70.1 52 59.6
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.2e-10 70.1 56 55.4
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.5e-10 69.7 56 51.8
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 1.5e-10 69.7 56 57.1
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 1.5e-10 69.7 53 56.6
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 1.5e-10 69.7 52 59.6
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 1.5e-10 69.7 63 50.8
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 2.0e-10 69.3 56 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 2.0e-10 69.3 46 58.7
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 2.0e-10 69.3 53 56.6
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 2.0e-10 69.3 53 56.6
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 2.6e-10 68.9 54 55.6
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 2.6e-10 68.9 54 55.6
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 2.6e-10 68.9 52 57.7
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 3.4e-10 68.6 53 58.5
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 3.4e-10 68.6 50 60.0
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 4.4e-10 68.2 56 55.4
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 5.7e-10 67.8 52 55.8
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 7.5e-10 67.4 53 54.7
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 9.8e-10 67.0 50 58.0
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 1.7e-09 66.2 51 52.9
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 2.8e-09 65.5 46 65.2
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 6.3e-09 64.3 50 56.0
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 1.1e-08 63.5 56 51.8
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 1.1e-08 63.5 50 56.0
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 1.4e-08 63.2 68 45.6
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 5.4e-08 61.2 48 52.1
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 9.2e-08 60.5 52 50.0
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 1.6e-07 59.7 48 52.1
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 3.5e-07 58.5 51 45.1
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 1.0e-06 57.0 53 47.2
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 1.7e-06 56.2 51 49.0
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 5.0e-06 54.7 66 43.9
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 6.6e-06 54.3 36 63.9


User provided reference genes

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