Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 1.9e-167 592.4 302 100.0
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 4.6e-145 518.1 302 89.4
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 4.2e-130 468.4 302 81.5
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 3.7e-126 455.3 307 79.8
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.9e-122 443.0 307 77.5
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 3.3e-119 432.2 309 75.1
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 3.5e-108 395.6 303 70.6
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 8.5e-107 391.0 309 68.3
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.5e-106 389.4 303 69.0
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 7.2e-106 387.9 303 68.6
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 8.8e-104 380.9 303 67.7
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 2.8e-102 375.9 303 66.7
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 2.8e-102 375.9 303 66.7
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 7.5e-87 324.7 301 60.1
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 2.2e-54 216.9 305 43.3
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 4.9e-54 215.7 281 44.1
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 1.1e-53 214.5 308 43.5
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.4e-53 214.2 267 45.7
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.6e-52 210.7 299 43.8
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 6.0e-52 208.8 310 41.6
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 6.0e-52 208.8 267 46.1
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 7.8e-52 208.4 299 43.5
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 1.3e-51 207.6 285 46.0
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 2.3e-51 206.8 295 43.4
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 8.6e-51 204.9 263 44.1
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.9e-50 203.8 267 43.4
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 2.5e-50 203.4 313 42.8
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 4.3e-50 202.6 306 41.2
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 4.3e-50 202.6 297 43.1
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 4.3e-50 202.6 297 42.1
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.6e-50 202.2 267 46.4
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 5.6e-50 202.2 291 43.6
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 5.6e-50 202.2 269 47.2
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 7.3e-50 201.8 281 44.8
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.2e-49 201.1 295 43.4
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 1.6e-49 200.7 292 42.1
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.6e-49 199.5 299 42.8
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 4.7e-49 199.1 292 42.8
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 4.7e-49 199.1 309 41.1
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 6.2e-49 198.7 292 42.8
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 8.1e-49 198.4 292 42.8
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 8.1e-49 198.4 257 46.3
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 8.1e-49 198.4 267 45.7
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-48 198.0 266 45.1
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-48 198.0 266 45.1
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-48 198.0 266 45.1
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 1.1e-48 198.0 301 41.2
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.2e-48 195.7 248 48.4
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 6.8e-48 195.3 263 46.8
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.8e-48 195.3 256 47.7
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.9e-48 194.9 247 49.0
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.2e-47 194.5 267 46.1
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.5e-47 194.1 304 40.1
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.5e-47 194.1 268 44.0
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.0e-47 193.7 292 41.8
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 2.0e-47 193.7 281 41.3
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.0e-47 193.7 248 47.6
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 2.6e-47 193.4 263 44.5
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-47 193.4 248 48.0
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-47 193.4 248 48.0
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-47 193.4 248 48.0
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 3.4e-47 193.0 313 39.9
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.4e-47 192.6 248 47.6
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.4e-47 192.6 252 46.4
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.4e-47 192.6 248 47.6
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 5.8e-47 192.2 258 45.7
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 5.8e-47 192.2 252 46.4
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.8e-47 192.2 250 45.2
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 5.8e-47 192.2 271 46.1
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 7.6e-47 191.8 292 41.4
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 7.6e-47 191.8 302 40.4
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.9e-47 191.4 248 47.6
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.7e-46 190.7 280 41.4
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.7e-46 190.7 271 45.8
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 2.2e-46 190.3 268 43.7
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.2e-46 190.3 261 44.8
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.2e-46 190.3 256 45.7
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 2.9e-46 189.9 292 41.1
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 2.9e-46 189.9 273 44.0
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 4.9e-46 189.1 300 42.0
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 6.4e-46 188.7 302 40.1
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.4e-46 188.7 302 40.1
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.1e-45 188.0 280 42.9
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 1.1e-45 188.0 260 41.9
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 1.1e-45 188.0 256 44.5
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 1.1e-45 188.0 293 41.6
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 1.9e-45 187.2 302 39.1
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.9e-45 187.2 297 43.8
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.2e-45 186.4 302 39.7
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 7.1e-45 185.3 276 43.1
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 2.1e-44 183.7 298 38.3
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 2.1e-44 183.7 260 43.1
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.5e-44 183.0 301 39.9
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.5e-44 183.0 302 39.4
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.5e-44 183.0 302 39.4
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 3.5e-44 183.0 297 40.7
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.6e-44 182.6 250 43.6
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 7.8e-44 181.8 289 41.9
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 1.3e-43 181.0 300 41.3
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.3e-43 181.0 218 49.5
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 6.6e-43 178.7 256 43.4
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.5e-42 177.6 198 50.5
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 3.3e-42 176.4 215 46.0
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.3e-41 174.5 298 38.3
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.6e-41 174.1 254 44.1
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-41 173.7 229 48.0
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 3.1e-40 169.9 239 45.2
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 2.6e-39 166.8 247 42.9
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 3.4e-39 166.4 262 42.0
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 4.4e-39 166.0 285 40.0
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 7.6e-39 165.2 259 40.9
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.3e-38 164.5 277 36.8
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 4.9e-38 162.5 250 43.2
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-37 160.6 225 40.4
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 6.0e-36 155.6 175 50.3
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-35 153.3 208 48.1
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 3.9e-35 152.9 271 36.9
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 3.9e-35 152.9 293 37.5
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 8.7e-35 151.8 219 44.3
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-34 150.6 190 47.9
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 7.4e-34 148.7 207 43.0
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-33 147.9 166 53.0
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.6e-33 146.4 175 50.9
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 1.4e-32 144.4 251 38.2
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 3.1e-32 143.3 224 40.6
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.5e-31 139.4 180 48.9
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.6e-28 131.0 163 49.7
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.6e-28 131.0 291 32.3
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.7e-28 130.2 298 31.9
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-27 126.3 148 48.0
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-25 121.3 138 48.6
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 4.8e-25 119.4 243 38.3
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 8.1e-25 118.6 144 47.2
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.1e-24 118.2 176 41.5
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 2.5e-21 107.1 209 33.5
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.7e-18 95.9 128 46.1
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.8e-17 92.8 267 29.6
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 2.9e-14 83.6 221 29.0
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 1.4e-13 81.3 201 31.3
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 2.3e-11 73.9 206 30.6
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 5.1e-11 72.8 155 32.9
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 6.9e-08 62.4 99 39.4
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 7.7e-07 58.9 94 37.2


User provided reference genes

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