Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G10870 Arabidopsis lyrata HOM05D000020 ORTHO05D080630 4.1e-75 284.6 146 100.0
Sp5g06700 Schrenkiella parvula HOM05D000020 ORTHO05D007189 1.1e-24 117.1 197 45.7
BcaB01g00062 Brassica carinata HOM05D000020 ORTHO05D007189 2.4e-22 109.4 218 41.7
Thhalv10010910m.g Eutrema salsugineum HOM05D000020 ORTHO05D007189 2.4e-22 109.4 218 41.7
AT3G55780 Arabidopsis thaliana HOM05D000020 ORTHO05D007189 5.3e-22 108.2 218 41.7
A09p48780 Brassica napus HOM05D000020 ORTHO05D007189 1.2e-21 107.1 218 40.8
BraA09t40331Z Brassica rapa HOM05D000020 ORTHO05D007189 1.2e-21 107.1 218 40.8
CARHR165890 Cardamine hirsuta HOM05D000020 ORTHO05D007189 1.5e-21 106.7 218 40.8
AL5G37060 Arabidopsis lyrata HOM05D000020 ORTHO05D007189 2.0e-21 106.3 218 40.8
BcaC07g39905 Brassica carinata HOM05D000020 ORTHO05D007189 3.4e-21 105.5 218 40.4
C08p31110 Brassica napus HOM05D000020 ORTHO05D007189 3.4e-21 105.5 218 40.4
BolC8t50732H Brassica oleracea HOM05D000020 ORTHO05D007189 3.4e-21 105.5 218 40.4
Carub.0005s2257 Capsella rubella HOM05D000020 ORTHO05D007189 2.2e-20 102.8 218 40.4
Aa31LG10G10770 Aethionema arabicum HOM05D000020 ORTHO05D007189 1.2e-18 97.1 226 36.7
THA.LOC104810181 Tarenaya hassleriana HOM05D000020 ORTHO05D007189 5.2e-17 91.7 237 33.8
Thhalv10006480m.g Eutrema salsugineum HOM05D000020 ORTHO05D007189 1.1e-16 90.5 218 36.2
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 2.6e-16 89.4 224 34.8
Thhalv10006375m.g Eutrema salsugineum HOM05D000020 ORTHO05D007189 2.8e-15 85.9 219 34.7
Ciclev10033928m.g Citrus clementina HOM05D000020 ORTHO05D007189 2.0e-13 79.7 238 31.1
Lj1P949T30 Lonicera japonica HOM05D000020 ORTHO05D007189 4.5e-13 78.6 227 30.8
Actinidia29672 Actinidia chinensis HOM05D000020 ORTHO05D007189 6.5e-12 74.7 224 30.8
GSVIVG01016379001 Vitis vinifera HOM05D000020 ORTHO05D007189 6.5e-12 74.7 226 32.3
Dinv21002 Davidia involucrata HOM05D000020 ORTHO05D007189 1.9e-11 73.2 223 29.6
Atru.chr12.254 Acer truncatum HOM05D000020 ORTHO05D007189 3.2e-11 72.4 236 30.5
COL.COLO4_25678 Corchorus olitorius HOM05D000020 ORTHO05D007189 4.2e-11 72.0 233 28.8
Sabra10G0149100 Salix brachista HOM05D000020 ORTHO05D007189 5.5e-11 71.6 229 30.6
TWI09G0809 Tripterygium wilfordii HOM05D000020 ORTHO05D007189 5.5e-11 71.6 228 32.0
Thhalv10005331m.g Eutrema salsugineum HOM05D000020 ORTHO05D007189 9.4e-11 70.9 218 33.5
CANSAT56G3422 Cannabis sativa HOM05D000020 ORTHO05D007189 1.2e-10 70.5 212 31.6
Manes.07G124600 Manihot esculenta HOM05D000020 ORTHO05D007189 1.6e-10 70.1 215 31.6
Potri.010G193700 Populus trichocarpa HOM05D000020 ORTHO05D007189 2.7e-10 69.3 229 30.1
Cpa.g.sc19.225 Carica papaya HOM05D000020 ORTHO05D007189 3.6e-10 68.9 234 28.6
Sc11g0007320 Simmondsia chinensis HOM05D000020 ORTHO05D007189 4.7e-10 68.6 225 29.8
Duzib114G0064 Durio zibethinus HOM05D000020 ORTHO05D007189 6.1e-10 68.2 234 27.4
Gohir.D10G242800 Gossypium hirsutum HOM05D000020 ORTHO05D007189 8.0e-10 67.8 232 29.3
QL08p062543 Quercus lobata HOM05D000020 ORTHO05D007189 8.0e-10 67.8 240 27.5
Migut.F01439 Erythranthe guttata HOM05D000020 ORTHO05D007189 1.0e-09 67.4 218 31.7
Gohir.A10G228800 Gossypium hirsutum HOM05D000020 ORTHO05D007189 1.0e-09 67.4 232 29.3
Gorai.011G279200 Gossypium raimondii HOM05D000020 ORTHO05D007189 1.0e-09 67.4 232 29.3
BcaB02g07605 Brassica carinata HOM05D000020 ORTHO05D007189 1.4e-09 67.0 207 30.4
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.4e-09 67.0 239 29.7
MD01G1145800 Malus domestica HOM05D000020 ORTHO05D007189 1.4e-09 67.0 210 30.0
Thecc.10G027300 Theobroma cacao HOM05D000020 ORTHO05D007189 2.3e-09 66.2 226 29.6
FvH4_7g23880 Fragaria vesca HOM05D000020 ORTHO05D007189 3.0e-09 65.9 231 29.9
FAN06G2964 Fragaria x ananassa HOM05D000020 ORTHO05D007189 3.0e-09 65.9 231 29.9
SGA_v2.0_scaffold76G25053 Striga asiatica HOM05D000020 ORTHO05D007189 3.0e-09 65.9 232 28.9
MD07G1213000 Malus domestica HOM05D000020 ORTHO05D007189 4.0e-09 65.5 210 29.5
Prupe.2G245200 Prunus persica HOM05D000020 ORTHO05D007189 4.0e-09 65.5 210 28.6
RcHm_v2.0_Chr1g0369251 Rosa chinensis HOM05D000020 ORTHO05D007189 6.7e-09 64.7 216 29.2
BcaC08g44842 Brassica carinata HOM05D000020 ORTHO05D007189 8.8e-09 64.3 212 28.3
C06p24490 Brassica napus HOM05D000020 ORTHO05D007189 8.8e-09 64.3 212 28.3
BolC6t37596H Brassica oleracea HOM05D000020 ORTHO05D007189 8.8e-09 64.3 212 28.3
PGR044G2611 Punica granatum HOM05D000020 ORTHO05D007189 8.8e-09 64.3 228 28.5
A07p23410 Brassica napus HOM05D000020 ORTHO05D007189 1.2e-08 63.9 209 31.1
BraA07t30004Z Brassica rapa HOM05D000020 ORTHO05D007189 1.2e-08 63.9 209 31.1
DCAR_019006 Daucus carota HOM05D000020 ORTHO05D007189 1.2e-08 63.9 209 29.2
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.0e-08 63.2 231 29.4
Medtr5g081720 Medicago truncatula HOM05D000020 ORTHO05D007189 2.0e-08 63.2 232 29.3
FAN03G1342 Fragaria x ananassa HOM05D000020 ORTHO05D007189 2.6e-08 62.8 231 29.4
ClCG07G003890 Citrullus lanatus HOM05D000020 ORTHO05D007189 3.3e-08 62.4 216 31.0
Rhsim03G0139400 Rhododendron simsii HOM05D000020 ORTHO05D007189 4.4e-08 62.0 220 27.3
TWI73G0310 Tripterygium wilfordii HOM05D000020 ORTHO05D007189 5.7e-08 61.6 228 30.7
TAR623G0626 Trochodendron aralioides HOM05D000020 ORTHO05D007189 5.7e-08 61.6 212 28.3
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 7.5e-08 61.2 152 33.6
Nitab4.5_0012179g0010 Nicotiana tabacum HOM05D006983 ORTHO05D007189 7.5e-08 61.2 233 26.6
SalBow6G4632 Salvia bowleyana HOM05D000020 ORTHO05D007189 7.5e-08 61.2 219 27.9
Sed0018426 Sechium edule HOM05D000020 ORTHO05D007189 7.5e-08 61.2 219 26.9
Aqoxy1G00735 Aquilegia oxysepala HOM05D000020 ORTHO05D007189 9.7e-08 60.8 239 26.4
Dinv20942 Davidia involucrata HOM05D000020 ORTHO05D007189 2.2e-07 59.7 99 39.4
Lsat_1_v5_gn_9_63241 Lactuca sativa HOM05D000020 ORTHO05D007189 2.2e-07 59.7 230 27.0
Nitab4.5_0000278g0220 Nicotiana tabacum HOM05D006983 ORTHO05D007189 2.2e-07 59.7 221 27.6
PGSC0003DMG400027385 Solanum tuberosum HOM05D000020 ORTHO05D007189 2.2e-07 59.7 240 26.2
PGSC0003DMG400031040 Solanum tuberosum HOM05D000020 ORTHO05D007189 2.2e-07 59.7 240 26.2
Oeu006659.1 Olea europaea HOM05D000020 ORTHO05D007189 2.8e-07 59.3 219 31.1
CAN.G394.1 Capsicum annuum HOM05D000020 ORTHO05D007189 3.7e-07 58.9 239 25.9
CiPaw.01G295200 Carya illinoinensis HOM05D000020 ORTHO05D007189 3.7e-07 58.9 234 26.9
AUR62022832 Chenopodium quinoa HOM05D000020 ORTHO05D007189 3.7e-07 58.9 219 26.0
CsaV3_5G008860 Cucumis sativus L. HOM05D000020 ORTHO05D007189 3.7e-07 58.9 217 28.1
SalBow6G4238 Salvia bowleyana HOM05D000020 ORTHO05D007189 4.8e-07 58.5 217 27.6
Solyc11g072230.1 Solanum lycopersicum HOM05D000020 ORTHO05D007189 4.8e-07 58.5 240 25.8
Sopen11g029900 Solanum pennellii HOM05D000020 ORTHO05D007189 4.8e-07 58.5 240 25.8
TPR.G8040 Trifolium pratense HOM05D000020 ORTHO05D007189 4.8e-07 58.5 232 28.9
MBI05_g34815_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D007189 6.3e-07 58.2 215 28.8
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 8.2e-07 57.8 130 36.2
Ca_05925_v3 Cicer arietinum L. HOM05D000020 ORTHO05D007189 1.4e-06 57.0 48 56.2
FvH4_6g52380 Fragaria vesca HOM05D000020 ORTHO05D007189 1.4e-06 57.0 51 60.8
Lsat_1_v5_gn_2_120421 Lactuca sativa HOM05D000020 ORTHO05D007189 1.8e-06 56.6 221 26.2
Psat2g036120 Pisum sativum HOM05D000020 ORTHO05D007189 2.4e-06 56.2 149 30.9
EL10Ac2g04779 Beta vulgaris HOM05D000020 ORTHO05D007189 3.1e-06 55.8 211 26.5
LjContig00357g0008917 Lotus japonicus HOM05D000020 ORTHO05D007189 3.1e-06 55.8 145 32.4
AUR62012199 Chenopodium quinoa HOM05D000020 ORTHO05D007189 4.1e-06 55.5 214 25.7
ECA238G3771 Erigeron canadensis HOM05D000020 ORTHO05D007189 5.3e-06 55.1 221 25.8
HanXRQChr09g0246881 Helianthus annuus HOM05D000020 ORTHO05D007189 9.1e-06 54.3 220 28.2


User provided reference genes

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