Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 1.9e-225 785.8 478 100.0
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 4.8e-197 691.4 478 89.1
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 9.4e-185 650.6 479 84.8
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 1.4e-183 646.7 478 85.8
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 2.8e-181 639.0 477 81.3
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 2.2e-178 629.4 478 81.6
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 5.5e-177 624.8 478 81.4
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 4.7e-176 621.7 480 81.5
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 1.4e-175 620.2 480 81.5
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 1.8e-175 619.8 476 83.2
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 1.8e-164 583.2 478 79.7
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 9.6e-137 491.1 471 71.3
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 3.9e-114 416.0 431 57.8
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 5.6e-113 412.1 476 61.1
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 9.7e-81 305.1 470 51.5
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 2.4e-79 300.4 179 85.5
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 1.2e-70 271.6 464 49.4
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 3.8e-69 266.5 471 47.1
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 1.2e-67 261.5 468 49.1
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 1.2e-67 261.5 468 49.1
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 1.2e-67 261.5 468 49.1
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 3.4e-65 253.4 470 49.1
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 7.0e-63 245.7 454 49.1
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 4.5e-62 243.0 473 48.8
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 1.0e-61 241.9 393 37.4
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.0e-61 239.6 470 48.7
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.5e-60 238.0 507 36.1
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 3.2e-60 236.9 470 44.7
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 4.2e-60 236.5 456 49.3
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 7.2e-60 235.7 448 47.5
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 2.1e-59 234.2 462 45.9
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 2.8e-59 233.8 457 45.5
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 2.8e-59 233.8 471 46.3
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 1.0e-58 231.9 458 46.1
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 3.0e-58 230.3 460 46.3
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 4.0e-58 229.9 473 44.2
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.2e-58 229.6 472 46.8
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 3.4e-57 226.9 472 46.4
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 4.4e-57 226.5 467 46.9
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 1.7e-56 224.6 478 44.8
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 2.2e-56 224.2 470 46.2
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 2.8e-56 223.8 456 38.6
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 2.8e-56 223.8 476 43.7
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 2.4e-55 220.7 473 46.1
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 3.1e-55 220.3 460 45.2
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 1.6e-54 218.0 454 45.2
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 3.5e-54 216.9 454 46.0
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 4.5e-54 216.5 465 45.8
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 1.7e-53 214.5 446 45.7
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 2.3e-53 214.2 457 43.8
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 3.8e-53 213.4 470 46.0
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 3.8e-53 213.4 473 44.2
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 6.6e-53 212.6 467 44.8
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 1.9e-52 211.1 445 45.8
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 1.9e-52 211.1 446 45.5
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 1.9e-52 211.1 456 46.1
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 9.5e-52 208.8 478 44.1
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 3.6e-51 206.8 446 45.3
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 1.0e-50 205.3 448 46.7
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 2.3e-50 204.1 470 41.5
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 3.0e-50 203.8 451 43.9
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 1.7e-48 198.0 459 40.7
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 2.2e-48 197.6 464 43.8
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 2.9e-48 197.2 451 41.0
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 8.3e-48 195.7 396 44.9
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 1.8e-47 194.5 474 43.2
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 2.4e-47 194.1 445 43.4
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 3.2e-47 193.7 470 42.8
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 4.1e-47 193.4 395 49.1
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 4.1e-47 193.4 448 44.4
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 7.0e-47 192.6 474 42.0
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 1.2e-46 191.8 452 43.1
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 2.3e-45 187.6 467 42.8
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 8.6e-45 185.7 472 42.6
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 3.3e-44 183.7 471 42.7
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 1.2e-43 181.8 459 39.9
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 1.2e-41 175.3 475 40.8
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 2.6e-41 174.1 160 53.8
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 1.0e-37 162.2 425 44.0
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 3.0e-37 160.6 439 41.7
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 3.9e-37 160.2 476 39.7
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 3.3e-36 157.1 374 46.5
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 4.7e-35 153.3 452 40.7
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 6.2e-35 152.9 175 45.7
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 1.2e-33 148.7 376 45.7
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 7.5e-33 146.0 161 46.6
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 9.8e-33 145.6 152 47.4
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 1.3e-32 145.2 432 41.4
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 1.3e-32 145.2 462 38.1
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.7e-32 144.8 135 54.8
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 9.2e-31 139.0 446 39.2
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 1.6e-30 138.3 421 40.1
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 1.0e-29 135.6 414 42.0
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 2.3e-29 134.4 440 41.1
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.1e-29 133.3 157 47.1
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 5.1e-29 133.3 429 40.6
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 5.6e-28 129.8 184 38.6
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 9.5e-28 129.0 352 44.3
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 8.1e-27 125.9 348 45.4
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 8.1e-27 125.9 322 48.4
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 1.2e-25 122.1 133 44.4
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.0e-25 121.3 121 49.6
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 3.4e-25 120.6 181 37.0
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 1.3e-24 118.6 133 44.4
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.3e-24 118.6 121 48.8
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 2.2e-24 117.9 155 43.2
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 4.9e-24 116.7 341 45.5
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 8.4e-24 115.9 488 30.7
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 1.6e-22 111.7 124 44.4
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 1.7e-21 108.2 140 42.9
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 1.2e-19 102.1 115 47.0
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 1.8e-18 98.2 235 56.2
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 2.4e-18 97.8 120 45.0
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 3.1e-18 97.4 115 42.6
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 5.2e-18 96.7 129 38.0
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 5.8e-17 93.2 104 42.3
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 1.3e-16 92.0 108 43.5
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 2.2e-16 91.3 412 24.0
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 4.8e-11 73.6 134 32.8
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 1.4e-10 72.0 85 44.7
FAN04G1593 Fragaria x ananassa HOM05D006400 ORTHO05D008039 6.9e-10 69.7 53 62.3
LjContig00408g0001360 Lotus japonicus HOM05D000424 ORTHO05D000355 9.0e-10 69.3 131 31.3
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 9.0e-10 69.3 112 33.0
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 1.2e-09 68.9 76 46.1
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 3.8e-08 63.9 389 21.1
Sabra11G0000300 Salix brachista HOM05D000891 ORTHO05D000761 6.4e-08 63.2 126 32.5
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 8.4e-08 62.8 208 20.2
ATR0787G037 Amborella trichopoda HOM05D006400 ORTHO05D008039 1.9e-07 61.6 69 37.7
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 1.9e-07 61.6 104 32.7
Potri.011G001100 Populus trichocarpa HOM05D000891 ORTHO05D000761 1.9e-07 61.6 126 32.5
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 5.4e-07 60.1 165 27.3
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 5.4e-07 60.1 165 27.3
Potri.010G084000 Populus trichocarpa HOM05D000424 ORTHO05D000355 7.1e-07 59.7 187 26.2
VMungo1309G1642 Vigna mungo HOM05D007155 ORTHO05D003034 7.1e-07 59.7 125 27.2
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 9.3e-07 59.3 151 23.8
Gohir.D05G171300 Gossypium hirsutum HOM05D007956 ORTHO05D010152 9.3e-07 59.3 211 25.1
Atru.chr4.2418 Acer truncatum HOM05D000424 ORTHO05D000355 1.2e-06 58.9 165 27.9
Rhsim08G0086500 Rhododendron simsii HOM05D002007 ORTHO05D000355 1.2e-06 58.9 443 20.5
EL10Ac7g17845 Beta vulgaris HOM05D000424 ORTHO05D000355 1.6e-06 58.5 165 27.9
Gohir.A03G065800 Gossypium hirsutum HOM05D000424 ORTHO05D000355 1.6e-06 58.5 130 26.9
Gohir.D03G092300 Gossypium hirsutum HOM05D000424 ORTHO05D000355 1.6e-06 58.5 130 26.9
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 1.6e-06 58.5 211 25.1
Psat1g181920 Pisum sativum HOM05D000891 ORTHO05D000761 1.6e-06 58.5 120 32.5
Ca_24414_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 2.1e-06 58.2 151 25.2
Gohir.A05G168200 Gossypium hirsutum HOM05D007956 ORTHO05D010152 2.1e-06 58.2 161 26.1
Gorai.003G095900 Gossypium raimondii HOM05D000424 ORTHO05D000355 2.1e-06 58.2 130 26.9
HanXRQChr16g0502661 Helianthus annuus HOM05D007128 ORTHO05D009059 2.1e-06 58.2 172 24.4
Oeu002723.1 Olea europaea HOM05D007956 ORTHO05D010152 2.1e-06 58.2 173 24.9
Gohir.D11G332300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 2.7e-06 57.8 150 26.7
Phvul.002G043300 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 3.5e-06 57.4 133 29.3
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 3.5e-06 57.4 61 45.9
Potri.010G083900 Populus trichocarpa HOM05D000424 ORTHO05D000355 3.5e-06 57.4 131 28.2
Atru.chr11.1653 Acer truncatum HOM05D005622 ORTHO05D002854 4.6e-06 57.0 182 24.7
CANSAT78G0678 Cannabis sativa HOM05D000424 ORTHO05D000355 4.6e-06 57.0 166 24.7
CARHR025470 Cardamine hirsuta HOM05D005622 ORTHO05D002854 4.6e-06 57.0 178 24.2
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 4.6e-06 57.0 158 24.1
Migut.N00468 Erythranthe guttata HOM05D007128 ORTHO05D009059 4.6e-06 57.0 165 24.2
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 6.0e-06 56.6 273 19.0
A10p05290 Brassica napus HOM05D007128 ORTHO05D009059 6.0e-06 56.6 174 21.8
CiPaw.09G023000 Carya illinoinensis HOM05D006596 ORTHO05D008497 6.0e-06 56.6 197 20.8
Lj6g0001159 Lotus japonicus HOM05D007155 ORTHO05D003034 6.0e-06 56.6 122 26.2
MBI05_g00435_MAGBIO Magnolia biondii HOM05D006596 ORTHO05D008497 6.0e-06 56.6 147 26.5
Manes.03G175400 Manihot esculenta HOM05D000424 ORTHO05D000355 6.0e-06 56.6 177 23.7
Cpa.g.sc58.66 Carica papaya HOM05D000424 ORTHO05D000355 7.9e-06 56.2 145 26.2
Glyma.01G235800 Glycine max HOM05D000424 ORTHO05D000355 7.9e-06 56.2 121 28.9
Prupe.4G118800 Prunus persica HOM05D007155 ORTHO05D003034 7.9e-06 56.2 120 28.3
Sabra10G0059000 Salix brachista HOM05D000424 ORTHO05D000355 7.9e-06 56.2 187 25.1
SalBow6G5229 Salvia bowleyana HOM05D007128 ORTHO05D009059 7.9e-06 56.2 144 25.0


User provided reference genes

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