Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 7.4e-312 1072.8 541 100.0
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 3.2e-306 1054.3 541 98.2
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 6.7e-296 1020.0 542 95.0
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 6.1e-289 996.9 541 93.5
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 3.9e-288 994.2 541 93.2
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 9.1e-285 983.0 542 91.1
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.2e-284 982.6 542 91.1
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 2.0e-284 981.9 541 91.1
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 2.0e-284 981.9 541 91.1
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 5.9e-284 980.3 542 90.8
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.0e-283 979.5 541 90.9
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-283 979.2 541 91.1
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.9e-282 975.3 541 90.8
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 2.5e-282 974.9 538 90.3
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 2.5e-282 974.9 538 90.3
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 2.5e-282 974.9 538 90.3
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 4.2e-282 974.2 538 90.1
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 4.2e-282 974.2 542 90.4
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 3.6e-281 971.1 533 92.5
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 8.8e-280 966.5 537 90.5
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.5e-279 965.7 538 90.0
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 2.0e-276 955.3 566 86.0
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.4e-264 916.0 520 88.5
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 4.9e-246 854.4 543 81.2
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 8.9e-232 807.0 526 77.2
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 7.5e-231 803.9 534 76.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.3e-230 803.1 532 77.3
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.7e-230 802.7 525 76.8
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 6.4e-230 800.8 537 76.7
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 1.4e-229 799.7 543 75.5
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.4e-229 798.9 531 76.6
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 2.4e-229 798.9 535 76.1
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 7.1e-229 797.3 526 75.9
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.2e-228 796.6 537 75.6
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.7e-228 795.4 537 75.2
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.6e-227 790.8 526 75.5
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.1e-226 790.0 542 74.2
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 7.3e-226 787.3 531 75.3
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 3.6e-225 785.0 519 75.3
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 3.6e-225 785.0 527 74.8
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 4.7e-225 784.6 524 75.0
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 3.1e-224 781.9 532 73.5
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.6e-223 778.9 526 74.0
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.8e-223 777.7 524 74.4
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 7.6e-223 777.3 530 74.2
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 3.8e-222 775.0 523 75.3
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.4e-221 773.1 531 73.4
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.4e-221 772.3 538 72.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 5.1e-219 764.6 534 72.7
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 5.1e-219 764.6 531 72.9
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 3.3e-218 761.9 529 71.8
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 1.6e-217 759.6 541 71.2
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 6.2e-217 757.7 525 73.0
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 6.2e-217 757.7 537 72.8
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.4e-216 756.5 528 73.3
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 2.4e-216 755.7 531 72.3
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 5.2e-216 754.6 528 72.2
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 6.9e-216 754.2 462 82.9
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 8.9e-216 753.8 462 82.0
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 9.3e-213 743.8 492 76.2
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 9.3e-213 743.8 539 70.7
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.6e-212 743.0 538 70.1
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 2.1e-212 742.7 532 70.3
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 7.8e-212 740.7 539 69.8
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.3e-211 740.0 527 71.5
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.9e-211 738.4 536 70.0
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 5.1e-211 738.0 528 70.6
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 4.3e-210 734.9 531 70.1
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 1.3e-209 733.4 531 70.8
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.3e-209 733.4 528 70.5
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 6.2e-209 731.1 532 69.5
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 8.1e-209 730.7 511 72.8
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 8.1e-209 730.7 528 69.5
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.1e-208 730.3 520 72.3
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.4e-208 729.9 496 74.2
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 2.4e-208 729.2 537 68.7
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 4.0e-208 728.4 537 68.3
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 5.3e-208 728.0 526 69.2
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.5e-207 724.9 532 69.4
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 7.6e-207 724.2 531 68.7
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.7e-206 723.0 532 68.6
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.7e-206 723.0 504 72.2
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 3.2e-205 718.8 520 70.2
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 5.4e-205 718.0 529 70.7
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 2.1e-204 716.1 475 76.4
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.0e-203 713.8 524 68.9
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 2.3e-203 712.6 475 76.0
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 8.7e-203 710.7 517 70.6
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 8.1e-201 704.1 435 81.8
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.1e-200 703.7 532 66.2
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.8e-200 703.0 532 67.7
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 2.1e-196 689.5 529 65.6
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 2.7e-196 689.1 529 65.6
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 3.0e-195 685.6 528 65.3
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 3.9e-195 685.3 529 65.8
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 5.1e-195 684.9 531 64.0
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.1e-194 683.7 531 64.0
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.9e-194 682.9 527 64.9
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 2.8e-193 679.1 547 64.0
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 8.1e-193 677.6 525 65.7
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 2.4e-192 676.0 525 65.7
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 2.4e-192 676.0 533 67.2
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 9.0e-192 674.1 460 72.4
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 3.8e-190 668.7 541 62.5
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 4.9e-190 668.3 536 62.9
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.9e-189 666.4 534 63.1
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 7.1e-189 664.5 529 62.8
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.7e-188 662.5 453 75.5
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 9.6e-186 654.1 466 68.5
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 6.9e-184 647.9 528 61.6
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.8e-182 642.1 527 60.3
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 2.5e-181 639.4 445 73.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.1e-180 636.3 541 59.7
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 7.7e-175 617.8 533 59.1
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.3e-171 606.3 391 77.2
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.2e-166 589.7 392 75.5
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 9.7e-162 574.3 534 56.0
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.9e-157 560.1 466 60.5
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.5e-157 558.5 383 72.8
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 2.9e-150 536.2 395 67.6
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 6.5e-150 535.0 541 54.7
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 7.5e-146 521.5 389 66.8
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 6.3e-145 518.5 314 80.3
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.2e-138 497.7 355 69.9
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.2e-138 497.7 359 69.1
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.6e-132 476.1 470 50.2
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.4e-130 469.5 331 68.0
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.0e-127 460.3 522 46.9
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.1e-125 454.5 457 49.9
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.2e-119 434.5 559 43.5
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 2.9e-113 413.3 541 41.4
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 9.6e-101 371.7 226 82.3
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 3.5e-95 353.2 194 90.2
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.4e-90 336.7 264 67.0
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 4.5e-74 283.1 151 95.4
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.1e-61 241.9 191 66.0
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 6.3e-60 236.1 179 68.2
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 4.1e-51 206.8 171 60.8
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 8.8e-46 189.1 139 67.6
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.4e-43 181.8 152 61.8
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 7.0e-43 179.5 163 56.4
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.2e-42 178.7 143 62.2
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 5.9e-34 149.8 139 57.6
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 5.2e-30 136.7 97 66.0
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 8.8e-30 136.0 149 52.3
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.0e-26 124.8 123 55.3
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 4.0e-22 110.5 76 71.1
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 7.5e-21 106.3 71 70.4
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 6.3e-20 103.2 493 22.9
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 2.4e-19 101.3 497 23.7
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.3e-12 79.0 63 60.3
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.3e-12 79.0 63 60.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 3.0e-09 67.8 46 63.0
BcaB05g22957 Brassica carinata HOM05D004898 ORTHO05D091614 5.0e-09 67.0 33 90.9
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 6.6e-09 66.6 45 62.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 5.6e-08 63.5 45 62.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 7.3e-08 63.2 46 58.7


User provided reference genes

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