Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G10080 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 4.7e-25 117.1 60 100.0
Carub.0005s0929 Capsella rubella HOM05D006336 ORTHO05D007819 1.7e-19 98.6 54 88.9
AL5G21500 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 5.0e-19 97.1 54 88.9
AT3G43540 Arabidopsis thaliana HOM05D006336 ORTHO05D007819 1.1e-18 95.9 54 87.0
BcaB01g01223 Brassica carinata HOM05D006336 ORTHO05D007819 1.5e-18 95.5 54 85.2
CARHR098720 Cardamine hirsuta HOM05D006336 ORTHO05D007819 1.5e-18 95.5 54 85.2
Carub.0251s0001 Capsella rubella HOM05D006336 ORTHO05D007819 2.5e-18 94.7 51 90.2
A06p22570 Brassica napus HOM05D006336 ORTHO05D007819 1.2e-17 92.4 54 83.3
BraA06t25331Z Brassica rapa HOM05D006336 ORTHO05D007819 1.2e-17 92.4 54 83.3
Sp5g17620 Schrenkiella parvula HOM05D006336 ORTHO05D007819 2.1e-17 91.7 54 83.3
BcaC01g02096 Brassica carinata HOM05D006336 ORTHO05D007819 8.1e-17 89.7 54 81.5
C03p68560 Brassica napus HOM05D006336 ORTHO05D007819 8.1e-17 89.7 54 81.5
BolC3t19114H Brassica oleracea HOM05D006336 ORTHO05D007819 8.1e-17 89.7 54 81.5
Thhalv10002575m.g Eutrema salsugineum HOM05D006336 ORTHO05D007819 6.8e-16 86.7 54 83.3
Aa31LG4G13380 Aethionema arabicum HOM05D006336 ORTHO05D007819 1.2e-15 85.9 54 77.8
THA.LOC104799597 Tarenaya hassleriana HOM05D006336 ORTHO05D007819 2.7e-12 74.7 54 66.7
CANSAT25G0260 Cannabis sativa HOM05D006336 ORTHO05D007819 1.0e-11 72.8 54 63.0
Atru.chr7.1812 Acer truncatum HOM05D006336 ORTHO05D007819 2.3e-11 71.6 54 64.8
TAR624G1124 Trochodendron aralioides HOM05D006336 ORTHO05D007819 1.1e-10 69.3 54 63.0
MBI13_g01670_MAGBIO Magnolia biondii HOM05D006336 ORTHO05D007819 1.5e-10 68.9 54 63.0
Potri.006G217700 Populus trichocarpa HOM05D006336 ORTHO05D007819 1.5e-10 68.9 54 63.0
ClCG05G015960 Citrullus lanatus HOM05D006336 ORTHO05D007819 1.9e-10 68.6 52 59.6
Aqoxy7G04150 Aquilegia oxysepala HOM05D006336 ORTHO05D007819 3.3e-10 67.8 54 61.1
Lalb_Chr24g0393711 Lupinus albus HOM05D006336 ORTHO05D007819 3.3e-10 67.8 54 57.4
Ciclev10009629m.g Citrus clementina HOM05D006336 ORTHO05D007819 4.3e-10 67.4 54 63.0
arahy.Tifrunner.gnm1.ann1.6DI6VD Arachis hypogaea HOM05D006336 ORTHO05D007819 9.5e-10 66.2 54 51.9
Duzib187G1166 Durio zibethinus HOM05D006336 ORTHO05D007819 9.5e-10 66.2 54 59.3
PGR044G0762 Punica granatum HOM05D006336 ORTHO05D007819 9.5e-10 66.2 54 55.6
Sabra06G0167900 Salix brachista HOM05D006336 ORTHO05D007819 9.5e-10 66.2 54 61.1
TWI32G0525 Tripterygium wilfordii HOM05D006336 ORTHO05D007819 1.2e-09 65.9 54 61.1
Cfa017842 Carpinus fangiana HOM05D006336 ORTHO05D007819 1.6e-09 65.5 54 53.7
Nn6g35635 Nelumbo nucifera HOM05D006336 ORTHO05D007819 1.6e-09 65.5 54 61.1
Rhsim03G0050100 Rhododendron simsii HOM05D006336 ORTHO05D007819 1.6e-09 65.5 54 64.8
Sc04g0003070 Simmondsia chinensis HOM05D006336 ORTHO05D007819 1.6e-09 65.5 54 57.4
GSVIVG01035507001 Vitis vinifera HOM05D006336 ORTHO05D007819 2.1e-09 65.1 54 64.8
Eucgr.C03178 Eucalyptus grandis HOM05D006336 ORTHO05D007819 2.8e-09 64.7 54 53.7
Gohir.A06G081300 Gossypium hirsutum HOM05D006336 ORTHO05D007819 2.8e-09 64.7 54 57.4
Manes.03G055500 Manihot esculenta HOM05D006336 ORTHO05D007819 2.8e-09 64.7 54 59.3
Thecc.09G066700 Theobroma cacao HOM05D006336 ORTHO05D007819 3.6e-09 64.3 54 55.6
vmacro07660 Vaccinium macrocarpon HOM05D006336 ORTHO05D007819 4.7e-09 63.9 54 61.1
Glyma.17G220200 Glycine max HOM05D006336 ORTHO05D007819 6.2e-09 63.5 54 53.7
TAR636G2611 Trochodendron aralioides HOM05D006336 ORTHO05D007819 6.2e-09 63.5 54 57.4
Cpa.g.sc82.21 Carica papaya HOM05D006336 ORTHO05D007819 8.1e-09 63.2 54 55.6
Gohir.D06G080900 Gossypium hirsutum HOM05D006336 ORTHO05D007819 8.1e-09 63.2 54 55.6
Gorai.010G094300 Gossypium raimondii HOM05D006336 ORTHO05D007819 8.1e-09 63.2 54 55.6
Phvul.001G044100 Phaseolus vulgaris HOM05D006336 ORTHO05D007819 8.1e-09 63.2 54 51.9
Psat6g024200 Pisum sativum HOM05D006336 ORTHO05D007819 8.1e-09 63.2 54 51.9
RcHm_v2.0_Chr6g0304731 Rosa chinensis HOM05D006336 ORTHO05D007819 1.1e-08 62.8 54 55.6
VMungo0647G1288 Vigna mungo HOM05D006336 ORTHO05D007819 1.1e-08 62.8 54 51.9
MELO3C016932.2 Cucumis melo HOM05D006336 ORTHO05D007819 1.8e-08 62.0 52 53.8
CsaV3_4G036230 Cucumis sativus L. HOM05D006336 ORTHO05D007819 1.8e-08 62.0 52 53.8
Lj5g0013864 Lotus japonicus HOM05D006336 ORTHO05D007819 1.8e-08 62.0 54 50.0
Medtr1g014730 Medicago truncatula HOM05D006336 ORTHO05D007819 1.8e-08 62.0 54 51.9
COL.COLO4_21171 Corchorus olitorius HOM05D006336 ORTHO05D007819 2.3e-08 61.6 54 53.7
FvH4_2g37050 Fragaria vesca HOM05D006336 ORTHO05D007819 2.3e-08 61.6 54 55.6
Dinv09419 Davidia involucrata HOM05D006336 ORTHO05D007819 3.1e-08 61.2 54 61.1
TPR.G38941 Trifolium pratense HOM05D006336 ORTHO05D007819 4.0e-08 60.8 54 50.0
CSS0028971 Camellia sinensis var. sinensis HOM05D006336 ORTHO05D007819 6.8e-08 60.1 54 59.3
Ca_13088_v3 Cicer arietinum L. HOM05D006336 ORTHO05D007819 6.8e-08 60.1 54 48.1
arahy.Tifrunner.gnm1.ann1.YUGK7S Arachis hypogaea HOM05D006336 ORTHO05D007819 1.2e-07 59.3 54 50.0
CiPaw.13G138600 Carya illinoinensis HOM05D006336 ORTHO05D007819 1.5e-07 58.9 54 51.9
Prupe.1G401200 Prunus persica HOM05D006336 ORTHO05D007819 1.5e-07 58.9 54 57.4
Sed0027870 Sechium edule HOM05D006336 ORTHO05D007819 2.0e-07 58.5 52 50.0
FAN27G0198 Fragaria x ananassa HOM05D006336 ORTHO05D007819 2.6e-07 58.2 54 53.7
Actinidia27818 Actinidia chinensis HOM05D006336 ORTHO05D007819 3.4e-07 57.8 51 58.8
Glyma.06G258800 Glycine max HOM05D006336 ORTHO05D007819 4.4e-07 57.4 54 51.9
Nitab4.5_0008763g0010 Nicotiana tabacum HOM05D006336 ORTHO05D007819 4.4e-07 57.4 52 53.8
Oeu047793.1 Olea europaea HOM05D006336 ORTHO05D007819 4.4e-07 57.4 54 50.0
CAN.G22.30 Capsicum annuum HOM05D006336 ORTHO05D007819 5.8e-07 57.0 52 53.8
ATR0681G177 Amborella trichopoda HOM05D006336 ORTHO05D007819 7.6e-07 56.6 52 50.0
Zm00001eb313900 Zea mays HOM05D006336 ORTHO05D007819 7.6e-07 56.6 53 50.9
EL10Ac5g11099 Beta vulgaris HOM05D006336 ORTHO05D007819 9.9e-07 56.2 54 50.0
MD08G1047000 Malus domestica HOM05D006336 ORTHO05D007819 9.9e-07 56.2 54 51.9
Sopen08g023730 Solanum pennellii HOM05D006336 ORTHO05D007819 1.3e-06 55.8 52 53.8
PGSC0003DMG400020816 Solanum tuberosum HOM05D006336 ORTHO05D007819 1.3e-06 55.8 52 53.8
PGSC0003DMG400020818 Solanum tuberosum HOM05D006336 ORTHO05D007819 1.3e-06 55.8 52 53.8
Cc08_g04560 Coffea canephora HOM05D006336 ORTHO05D007819 1.7e-06 55.5 54 50.0
Ah.01g016210 Amaranthus hybridus HOM05D006336 ORTHO05D007819 4.9e-06 53.9 54 46.3


User provided reference genes

Program Settings