Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.9e-28 127.1 91 100.0
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.9e-28 127.1 91 100.0
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 6.0e-24 114.0 69 89.9
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.9e-23 111.3 67 89.6
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.4e-20 102.8 69 82.6
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 4.1e-20 101.3 69 78.3
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 4.1e-20 101.3 69 78.3
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 4.1e-20 101.3 69 78.3
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 5.3e-20 100.9 69 78.3
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.5e-19 99.4 69 76.8
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.5e-19 99.4 69 76.8
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.7e-18 95.9 68 73.5
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.9e-18 95.1 68 73.5
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 3.2e-17 91.7 69 72.5
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 7.9e-16 87.0 69 69.6
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 3.0e-15 85.1 69 66.7
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 3.0e-15 85.1 66 71.2
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 6.7e-15 84.0 65 66.2
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.1e-14 83.2 66 68.2
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.9e-14 82.4 66 68.2
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 1.9e-14 82.4 68 64.7
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 3.3e-14 81.6 66 66.7
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 3.3e-14 81.6 66 66.7
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 4.3e-14 81.3 65 64.6
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 7.4e-14 80.5 69 66.7
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 9.7e-14 80.1 69 63.8
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 6.3e-13 77.4 68 63.2
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 8.2e-13 77.0 66 68.2
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 8.2e-13 77.0 67 61.2
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.4e-12 76.3 69 62.3
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 4.1e-12 74.7 67 62.7
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 5.3e-12 74.3 65 61.5
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 5.3e-12 74.3 67 59.7
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 6.9e-12 73.9 66 63.6
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 6.9e-12 73.9 66 63.6
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 9.1e-12 73.6 69 56.5
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 9.1e-12 73.6 67 58.2
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-11 73.2 69 56.5
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.5e-11 72.8 67 61.2
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 1.5e-11 72.8 65 63.1
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.5e-11 72.8 66 63.6
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.5e-11 72.8 66 63.6
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.0e-11 72.4 63 68.3
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.0e-11 72.4 67 62.7
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.0e-11 72.4 66 60.6
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 2.0e-11 72.4 66 62.1
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.0e-11 72.4 67 61.2
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 2.6e-11 72.0 67 61.2
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.6e-11 72.0 66 59.1
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 3.4e-11 71.6 66 63.6
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 3.4e-11 71.6 65 66.2
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.5e-11 71.2 67 56.7
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.5e-11 71.2 67 56.7
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.9e-11 70.9 67 62.7
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 5.9e-11 70.9 67 58.2
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 5.9e-11 70.9 68 61.8
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 5.9e-11 70.9 67 56.7
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 7.7e-11 70.5 66 62.1
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 7.7e-11 70.5 66 60.6
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.0e-10 70.1 63 63.5
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.3e-10 69.7 66 59.1
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.3e-10 69.7 64 59.4
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.3e-10 69.7 69 58.0
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.7e-10 69.3 67 58.2
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.7e-10 69.3 67 59.7
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.7e-10 69.3 64 59.4
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.7e-10 69.3 67 59.7
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.7e-10 69.3 67 59.7
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.7e-10 69.3 68 58.8
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-10 68.9 65 63.1
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 2.2e-10 68.9 67 56.7
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.2e-10 68.9 69 59.4
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.9e-10 68.6 65 63.1
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.9e-10 68.6 66 60.6
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 2.9e-10 68.6 67 56.7
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 5.0e-10 67.8 65 58.5
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 5.0e-10 67.8 67 56.7
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 6.5e-10 67.4 67 55.2
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 6.5e-10 67.4 64 57.8
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 6.5e-10 67.4 63 60.3
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 8.5e-10 67.0 69 56.5
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 8.5e-10 67.0 66 56.1
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.1e-09 66.6 66 59.1
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 1.4e-09 66.2 67 53.7
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.4e-09 66.2 66 59.1
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.4e-09 66.2 66 57.6
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.9e-09 65.9 64 60.9
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.9e-09 65.9 69 53.6
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.5e-09 65.5 64 57.8
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 2.5e-09 65.5 68 55.9
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 2.5e-09 65.5 65 61.5
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 2.5e-09 65.5 67 59.7
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 4.2e-09 64.7 65 56.9
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 4.2e-09 64.7 66 57.6
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 5.5e-09 64.3 66 56.1
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 5.5e-09 64.3 69 56.5
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 5.5e-09 64.3 65 60.0
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 5.5e-09 64.3 66 57.6
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 5.5e-09 64.3 68 51.5
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 5.5e-09 64.3 66 57.6
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 7.2e-09 63.9 66 54.5
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 7.2e-09 63.9 66 54.5
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 9.4e-09 63.5 58 62.1
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 9.4e-09 63.5 65 56.9
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 9.4e-09 63.5 66 54.5
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.2e-08 63.2 56 60.7
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.2e-08 63.2 66 59.1
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-08 63.2 56 66.1
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.2e-08 63.2 61 60.7
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.2e-08 63.2 69 55.1
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 2.1e-08 62.4 56 62.5
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.1e-08 62.4 65 58.5
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 2.7e-08 62.0 66 56.1
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.7e-08 62.0 66 53.0
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.6e-08 61.6 67 55.2
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 3.6e-08 61.6 67 53.7
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.6e-08 61.6 69 55.1
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 3.6e-08 61.6 68 52.9
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.7e-08 61.2 62 56.5
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 6.1e-08 60.8 68 50.0
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.0e-07 60.1 71 53.5
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.0e-07 60.1 63 55.6
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.0e-07 60.1 59 52.5
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.0e-07 60.1 64 57.8
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.4e-07 59.7 68 51.5
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.4e-07 59.7 66 51.5
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.8e-07 59.3 64 53.1
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.8e-07 59.3 69 58.0
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 3.9e-07 58.2 67 50.7
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.7e-07 57.4 70 50.0
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 1.1e-06 56.6 67 49.3
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.0e-06 55.8 67 52.2
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.6e-06 55.5 66 51.5
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.3e-06 55.1 65 55.4
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.4e-06 54.7 63 54.0
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 5.7e-06 54.3 61 59.0
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 5.7e-06 54.3 65 52.3
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 5.7e-06 54.3 67 47.8
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 5.7e-06 54.3 68 48.5
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 5.7e-06 54.3 66 54.5
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 5.7e-06 54.3 56 58.9
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 7.4e-06 53.9 44 61.4
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 7.4e-06 53.9 58 53.4
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 7.4e-06 53.9 56 58.9
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 9.7e-06 53.5 42 61.9


User provided reference genes

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