Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.4e-29 131.3 58 100.0
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 8.6e-27 122.9 58 91.4
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.9e-22 107.1 58 82.8
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.2e-21 104.4 59 79.7
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.0e-20 101.7 58 79.3
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.5e-20 100.9 59 76.3
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.6e-17 92.0 61 67.2
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.8e-17 91.3 57 68.4
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 4.7e-17 90.5 54 74.1
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 4.0e-16 87.4 55 69.1
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.5e-15 85.5 59 64.4
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.6e-15 84.7 57 64.9
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.6e-15 84.7 59 67.8
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 4.4e-15 84.0 56 66.1
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 4.4e-15 84.0 57 68.4
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 5.8e-15 83.6 56 66.1
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.8e-15 83.6 55 69.1
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 7.5e-15 83.2 55 67.3
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 9.8e-15 82.8 57 63.2
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.3e-14 82.4 57 64.9
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.3e-14 82.4 58 63.8
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.7e-14 82.0 56 64.3
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.7e-14 82.0 58 65.5
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 2.2e-14 81.6 61 63.9
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 2.2e-14 81.6 56 62.5
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.9e-14 81.3 57 63.2
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 3.7e-14 80.9 56 64.3
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 4.9e-14 80.5 57 63.2
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 4.9e-14 80.5 56 62.5
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.4e-14 80.1 57 63.2
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 6.4e-14 80.1 55 63.6
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 6.4e-14 80.1 56 64.3
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 6.4e-14 80.1 52 69.2
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.4e-14 80.1 52 69.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.4e-14 80.1 52 69.2
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.4e-14 80.1 52 69.2
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 6.4e-14 80.1 55 65.5
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 8.3e-14 79.7 57 63.2
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 8.3e-14 79.7 56 64.3
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 8.3e-14 79.7 57 59.6
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 8.3e-14 79.7 52 69.2
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-13 79.3 57 63.2
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-13 79.3 57 63.2
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.1e-13 79.3 57 63.2
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.4e-13 79.0 58 62.1
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.4e-13 79.0 57 64.9
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.9e-13 78.6 57 61.4
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.9e-13 78.6 54 63.0
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.9e-13 78.6 55 65.5
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 2.4e-13 78.2 56 62.5
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 2.4e-13 78.2 58 65.5
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 2.4e-13 78.2 56 60.7
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.4e-13 78.2 56 60.7
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 2.4e-13 78.2 57 63.2
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.2e-13 77.8 57 61.4
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.2e-13 77.8 55 63.6
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 3.2e-13 77.8 56 64.3
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.4e-13 77.0 52 67.3
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 5.4e-13 77.0 53 62.3
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 5.4e-13 77.0 55 61.8
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 5.4e-13 77.0 55 61.8
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 5.4e-13 77.0 55 61.8
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.4e-13 77.0 59 62.7
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 7.1e-13 76.6 52 65.4
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 7.1e-13 76.6 57 61.4
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 7.1e-13 76.6 57 61.4
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 7.1e-13 76.6 55 61.8
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 7.1e-13 76.6 55 65.5
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 7.1e-13 76.6 59 62.7
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 9.2e-13 76.3 57 59.6
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 9.2e-13 76.3 55 63.6
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 9.2e-13 76.3 55 63.6
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 9.2e-13 76.3 57 59.6
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.2e-12 75.9 55 61.8
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.6e-12 75.5 55 60.0
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.6e-12 75.5 52 65.4
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.6e-12 75.5 55 65.5
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.6e-12 75.5 56 60.7
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.1e-12 75.1 55 61.8
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 2.1e-12 75.1 56 58.9
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 2.7e-12 74.7 57 57.9
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.7e-12 74.7 59 61.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 3.5e-12 74.3 53 64.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 3.5e-12 74.3 53 64.2
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 3.5e-12 74.3 56 62.5
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 6.0e-12 73.6 59 61.0
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 7.8e-12 73.2 55 60.0
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 7.8e-12 73.2 55 60.0
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 7.8e-12 73.2 59 59.3
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 7.8e-12 73.2 57 57.9
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.0e-11 72.8 53 60.4
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.0e-11 72.8 53 64.2
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.0e-11 72.8 57 59.6
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.3e-11 72.4 55 63.6
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 2.3e-11 71.6 56 58.9
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.3e-11 71.6 56 58.9
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.3e-11 71.6 56 58.9
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 3.0e-11 71.2 54 57.4
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 5.1e-11 70.5 57 54.4
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.1e-11 70.5 53 60.4
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 6.6e-11 70.1 52 61.5
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 6.6e-11 70.1 57 56.1
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 8.6e-11 69.7 55 56.4
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 8.6e-11 69.7 55 58.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.1e-10 69.3 52 59.6
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.1e-10 69.3 54 59.3
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 1.1e-10 69.3 57 50.9
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.1e-10 69.3 57 54.4
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.5e-10 68.9 52 61.5
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.5e-10 68.9 55 56.4
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.9e-10 68.6 55 60.0
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 2.5e-10 68.2 56 60.7
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.3e-10 67.8 55 56.4
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 3.3e-10 67.8 58 56.9
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 5.6e-10 67.0 57 52.6
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 7.3e-10 66.6 54 59.3
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 9.5e-10 66.2 54 59.3
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.6e-09 65.5 53 56.6
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.1e-09 65.1 57 52.6
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 2.1e-09 65.1 55 56.4
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 3.6e-09 64.3 55 58.2
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 4.7e-09 63.9 54 57.4
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 4.7e-09 63.9 54 57.4
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.1e-08 62.8 54 53.7
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.1e-08 62.8 53 52.8
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.1e-08 62.8 53 52.8
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.4e-08 62.4 55 50.9
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.4e-08 62.4 55 50.9
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.4e-08 62.4 55 50.9
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.4e-08 62.4 55 50.9
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.4e-08 62.4 55 50.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.4e-08 62.4 55 50.9
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.4e-08 62.4 55 50.9
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.8e-08 62.0 52 57.7
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.3e-08 61.6 55 49.1
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.1e-08 61.2 55 50.9
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 3.1e-08 61.2 57 47.4
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.4e-07 57.8 110 31.8
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.3e-06 55.8 53 50.9
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 6.4e-06 53.5 52 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 8.4e-06 53.1 54 40.7
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 8.4e-06 53.1 54 40.7


User provided reference genes

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