Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 3.5e-279 964.5 565 100.0
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 1.7e-217 759.6 578 80.4
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 1.0e-182 644.0 494 73.5
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 1.5e-176 623.6 574 65.9
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 1.3e-161 573.9 565 62.1
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 4.3e-160 568.9 581 61.1
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 4.4e-157 558.9 568 61.3
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 1.7e-156 557.0 568 61.1
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 1.9e-147 526.9 572 62.1
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 3.0e-145 519.6 577 55.8
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 2.1e-138 496.9 583 54.4
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 1.5e-136 490.7 580 53.4
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 2.1e-135 486.9 564 56.9
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 1.5e-133 480.7 599 50.9
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 2.0e-133 480.3 568 57.2
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 1.4e-131 474.2 577 53.0
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 3.2e-131 473.0 575 53.7
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 3.4e-125 453.0 580 51.6
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 3.8e-124 449.5 481 59.5
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 5.1e-121 439.1 575 52.9
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 7.1e-115 418.7 576 48.6
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 1.3e-113 414.5 576 49.0
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 6.7e-113 412.1 568 48.8
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 8.7e-113 411.8 574 48.6
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 2.5e-112 410.2 575 47.8
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 1.7e-92 344.4 577 44.4
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 9.4e-83 312.0 593 39.3
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 1.2e-82 311.6 593 40.3
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 1.1e-80 305.1 588 37.9
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 3.7e-79 300.1 578 40.5
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 1.4e-78 298.1 598 41.1
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 2.0e-77 294.3 591 38.9
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 1.9e-75 287.7 579 37.5
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 1.9e-75 287.7 591 40.9
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 4.2e-75 286.6 576 39.2
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 2.7e-74 283.9 578 36.0
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 4.7e-74 283.1 594 39.9
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 4.7e-74 283.1 569 37.6
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 8.0e-74 282.3 572 37.2
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 1.0e-73 282.0 594 36.4
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 8.8e-73 278.9 583 37.6
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 1.5e-72 278.1 588 37.8
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 9.7e-72 275.4 588 39.6
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 1.1e-70 271.9 578 37.0
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 1.8e-70 271.2 600 39.3
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 3.1e-70 270.4 569 38.0
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 4.5e-69 266.5 522 38.9
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 8.5e-68 262.3 585 39.1
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 1.1e-67 261.9 583 38.9
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 1.1e-67 261.9 585 36.9
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 1.5e-64 251.5 585 38.6
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 1.5e-64 251.5 585 38.6
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 2.2e-63 247.7 561 34.9
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 1.4e-62 245.0 570 38.8
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 1.2e-61 241.9 586 37.9
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 1.6e-61 241.5 484 37.6
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 7.7e-61 239.2 585 34.7
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 2.3e-60 237.7 577 34.1
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 2.1e-58 231.1 580 37.2
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 3.6e-58 230.3 583 36.0
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 6.1e-58 229.6 588 34.4
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 1.0e-57 228.8 576 35.9
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 2.3e-57 227.6 577 36.6
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 1.2e-56 225.3 566 38.5
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 2.6e-56 224.2 573 32.3
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 2.6e-56 224.2 568 36.6
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 3.4e-56 223.8 574 34.7
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 8.3e-55 219.2 494 34.8
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 4.1e-54 216.9 437 41.0
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 5.4e-54 216.5 599 30.7
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 2.0e-53 214.5 574 35.4
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 1.0e-52 212.2 592 32.8
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 1.3e-52 211.8 475 38.9
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 3.8e-52 210.3 573 35.6
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 5.0e-52 209.9 574 34.8
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 8.6e-52 209.1 573 35.4
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 8.6e-52 209.1 578 35.8
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 2.5e-51 207.6 571 32.4
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 4.3e-51 206.8 601 35.9
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 5.6e-51 206.5 584 35.8
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 2.1e-50 204.5 569 33.4
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 8.0e-50 202.6 571 35.6
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 8.0e-50 202.6 571 37.5
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 1.4e-49 201.8 581 34.3
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 5.2e-49 199.9 599 29.9
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 3.4e-48 197.2 572 35.7
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 7.5e-48 196.1 577 30.3
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 1.3e-47 195.3 574 35.2
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 1.3e-47 195.3 577 35.2
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 2.9e-47 194.1 574 33.3
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 2.9e-47 194.1 568 33.3
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 2.9e-47 194.1 562 36.1
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 2.9e-47 194.1 570 30.9
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 3.7e-47 193.7 570 34.0
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 4.9e-47 193.4 528 33.0
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 1.1e-46 192.2 573 33.0
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 1.4e-46 191.8 519 30.3
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 3.2e-46 190.7 565 32.2
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 7.0e-46 189.5 513 31.0
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 2.0e-45 188.0 553 29.5
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 7.8e-45 186.0 525 36.4
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 1.7e-44 184.9 586 31.4
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 5.0e-44 183.3 528 31.1
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 6.6e-44 183.0 454 34.8
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 2.5e-43 181.0 572 34.3
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 9.5e-43 179.1 567 28.9
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 1.5e-40 171.8 546 30.6
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 5.8e-40 169.9 537 28.5
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.7e-39 168.3 573 31.1
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 1.7e-39 168.3 559 32.9
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 7.0e-38 162.9 591 33.7
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 9.2e-38 162.5 591 29.9
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 3.5e-37 160.6 585 31.3
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 1.3e-36 158.7 584 32.9
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 2.3e-36 157.9 562 31.1
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 6.6e-36 156.4 575 32.3
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 4.3e-35 153.7 571 32.0
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 9.5e-35 152.5 585 30.9
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 1.2e-34 152.1 596 31.2
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 4.7e-34 150.2 477 29.8
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 3.1e-33 147.5 585 29.6
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 3.1e-33 147.5 567 31.2
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 3.1e-33 147.5 384 38.3
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 2.0e-32 144.8 338 41.4
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 2.6e-32 144.4 302 38.4
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 2.6e-32 144.4 496 27.2
GSVIVG01030977001 Vitis vinifera HOM05D004905 ORTHO05D005456 4.3e-27 127.1 270 35.6
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 5.6e-27 126.7 557 30.9
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.8e-26 124.4 592 26.9
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 1.2e-24 119.0 485 29.5
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 5.8e-24 116.7 237 43.0
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 1.7e-20 105.1 397 29.7
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 1.1e-19 102.4 468 31.0
Eucgr.F02039 Eucalyptus grandis HOM05D001827 ORTHO05D001790 1.1e-17 95.9 497 26.8
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 1.1e-17 95.9 297 36.0
CARHR214590 Cardamine hirsuta HOM05D004905 ORTHO05D005456 1.8e-17 95.1 77 66.2
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 1.2e-16 92.4 482 26.3
Aqoxy4G00894 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 2.6e-16 91.3 193 32.1
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 5.8e-16 90.1 401 27.4
HanXRQChr12g0357381 Helianthus annuus HOM05D004905 ORTHO05D005456 1.7e-15 88.6 533 28.0
Haze_04421 Corylus avellana HOM05D004905 ORTHO05D019407 3.8e-15 87.4 176 37.5
AUR62023222 Chenopodium quinoa HOM05D004905 ORTHO05D005456 4.9e-15 87.0 215 30.7
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 1.1e-14 85.9 585 22.7
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 1.1e-14 85.9 492 23.8
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 3.2e-14 84.3 514 24.3
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 5.4e-14 83.6 564 23.2
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 9.3e-14 82.8 236 37.3
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 9.3e-14 82.8 227 30.0
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 1.7e-12 78.6 451 27.5
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 5.1e-12 77.0 544 21.3
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 1.5e-11 75.5 431 27.4
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 1.9e-11 75.1 444 25.9
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 7.3e-11 73.2 177 29.9
Medtr3g007920 Medicago truncatula HOM05D001827 ORTHO05D001790 7.3e-11 73.2 537 21.6
Oeu046939.1 Olea europaea HOM05D001827 ORTHO05D001790 9.6e-11 72.8 533 25.7
Migut.H01749 Erythranthe guttata HOM05D001827 ORTHO05D001790 6.2e-10 70.1 569 27.2
THA.LOC104817709 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 8.1e-10 69.7 602 24.4
Ah.06g180970 Amaranthus hybridus HOM05D001827 ORTHO05D001790 1.4e-09 68.9 531 26.0
TPR.G8584 Trifolium pratense HOM05D001827 ORTHO05D001790 1.4e-09 68.9 493 22.9
Zm00001eb342860 Zea mays HOM05D004905 ORTHO05D005456 2.0e-08 65.1 254 30.3
AUR62016892 Chenopodium quinoa HOM05D022647 ORTHO05D005456 2.6e-08 64.7 413 25.2
A10p13080 Brassica napus HOM05D001827 ORTHO05D001790 5.8e-08 63.5 196 29.1
BcaC04g20191 Brassica carinata HOM05D001827 ORTHO05D001790 9.9e-08 62.8 196 30.1
MBI14_g13533_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 1.3e-07 62.4 406 23.9
THA.LOC104811675 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 3.8e-07 60.8 564 23.9
SEGI_39497 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 8.4e-07 59.7 518 24.3
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.1e-06 59.3 629 21.9
Glyma.05G002000 Glycine max HOM05D004905 ORTHO05D005456 1.4e-06 58.9 552 27.0
Thhalv10012934m.g Eutrema salsugineum HOM05D001827 ORTHO05D001790 1.9e-06 58.5 196 29.6
BraA03t10681Z Brassica rapa HOM05D001827 ORTHO05D001790 2.4e-06 58.2 585 24.6
CsaV3_3G004170 Cucumis sativus L. HOM05D001827 ORTHO05D001790 4.2e-06 57.4 578 25.1
MSTRG.7123 Avicennia marina HOM05D001827 ORTHO05D001790 5.4e-06 57.0 486 24.5
Oeu005481.1 Olea europaea HOM05D001827 ORTHO05D001790 5.4e-06 57.0 527 23.9
QL06p049807 Quercus lobata HOM05D004905 ORTHO05D005456 5.4e-06 57.0 300 26.3
arahy.Tifrunner.gnm1.ann1.21F8WZ Arachis hypogaea HOM05D001827 ORTHO05D001790 7.1e-06 56.6 604 20.7


User provided reference genes

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