Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 5.0e-277 957.2 508 100.0
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 2.1e-243 845.5 537 87.0
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 1.4e-231 806.2 539 83.5
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.8e-213 746.1 489 81.0
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 3.8e-208 728.4 553 75.6
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 4.8e-203 711.4 515 77.7
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 5.7e-196 688.0 538 74.3
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 1.3e-192 676.8 545 73.6
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 1.9e-191 672.9 549 72.5
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 2.5e-191 672.5 549 72.7
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 2.9e-184 649.0 496 74.4
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 2.9e-184 649.0 496 74.4
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 5.7e-180 634.8 482 74.9
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.3e-152 543.9 492 62.4
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 8.3e-147 524.6 466 64.8
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 2.1e-134 483.4 463 61.6
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 2.1e-134 483.4 463 61.6
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 6.2e-134 481.9 413 64.6
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 6.2e-134 481.9 447 62.9
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 8.0e-134 481.5 467 61.5
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 8.0e-134 481.5 412 65.5
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 1.4e-133 480.7 460 61.7
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 2.3e-133 479.9 465 61.3
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 8.9e-133 478.0 463 60.7
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 2.7e-129 466.5 444 61.3
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 3.5e-129 466.1 464 59.1
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 8.9e-125 451.4 413 62.2
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 8.1e-118 428.3 350 68.3
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 6.6e-112 408.7 506 50.2
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.8e-109 400.6 520 49.0
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 3.4e-108 396.4 500 49.8
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 3.4e-108 396.4 452 51.3
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 6.4e-107 392.1 499 48.7
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 8.4e-107 391.7 499 49.3
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 8.4e-107 391.7 486 51.0
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 2.4e-106 390.2 410 55.1
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 5.4e-106 389.0 492 50.0
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.6e-105 387.5 451 48.8
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 2.1e-105 387.1 451 49.2
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 3.5e-105 386.3 462 50.9
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 4.6e-105 386.0 497 50.5
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 6.0e-105 385.6 489 49.9
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 7.8e-105 385.2 470 50.9
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.0e-104 384.8 475 50.3
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 2.3e-104 383.6 465 50.8
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 8.7e-104 381.7 484 49.4
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 1.5e-103 380.9 504 47.8
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 5.6e-103 379.0 499 46.5
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 1.3e-102 377.9 479 50.1
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 2.1e-102 377.1 411 54.7
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.8e-102 376.7 518 47.5
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 4.8e-102 375.9 408 53.9
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 8.1e-102 375.2 400 54.8
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 1.8e-101 374.0 491 47.5
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 5.8e-100 369.0 418 51.4
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 9.9e-100 368.2 490 48.6
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.2e-99 367.1 490 49.0
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 6.4e-99 365.5 511 45.4
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 8.4e-99 365.2 464 47.4
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.9e-98 364.0 512 45.9
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.9e-98 364.0 498 47.8
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 3.2e-98 363.2 446 50.9
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 4.2e-98 362.8 428 50.2
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 7.1e-98 362.1 486 46.7
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 9.3e-98 361.7 482 46.9
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 9.3e-98 361.7 477 46.1
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 1.2e-97 361.3 492 44.7
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 1.6e-97 360.9 434 48.6
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 4.6e-97 359.4 409 53.3
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 7.9e-97 358.6 419 48.7
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 1.0e-96 358.2 390 53.1
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 1.3e-96 357.8 408 52.0
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 1.8e-96 357.5 386 53.1
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 2.3e-96 357.1 366 55.2
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 3.0e-96 356.7 526 43.5
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 1.5e-95 354.4 495 44.8
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 1.9e-95 354.0 412 52.2
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 1.9e-95 354.0 412 51.9
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 4.3e-95 352.8 373 49.3
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 4.3e-95 352.8 510 44.7
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 5.6e-95 352.4 450 47.8
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 5.6e-95 352.4 492 44.3
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 6.2e-94 349.0 456 46.7
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 1.4e-93 347.8 463 48.4
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 2.4e-93 347.1 373 53.9
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 6.9e-93 345.5 493 45.4
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 2.0e-92 344.0 476 45.8
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 2.0e-92 344.0 481 45.5
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 5.8e-92 342.4 519 42.6
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 5.8e-92 342.4 461 46.4
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.0e-91 341.7 381 51.4
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.3e-91 341.3 441 49.0
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 1.3e-91 341.3 531 44.8
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.9e-91 340.1 392 51.5
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 4.9e-91 339.3 483 47.4
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 8.4e-91 338.6 512 43.4
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 8.4e-91 338.6 505 44.6
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 1.9e-90 337.4 475 46.9
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 1.6e-89 334.3 474 45.1
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 1.6e-89 334.3 457 46.8
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.6e-89 332.8 389 49.4
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 7.9e-89 332.0 432 47.2
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 3.3e-87 326.6 490 43.1
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 8.2e-86 322.0 436 46.3
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 1.1e-85 321.6 501 44.9
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 2.4e-85 320.5 386 47.4
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 1.2e-84 318.2 473 45.0
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.2e-84 318.2 353 47.9
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 2.6e-84 317.0 410 44.9
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 3.4e-84 316.6 351 51.6
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.7e-83 314.3 368 52.2
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 8.4e-83 312.0 412 45.4
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 2.5e-82 310.5 408 47.3
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 1.6e-81 307.8 466 41.6
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 2.2e-78 297.4 487 39.2
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 3.4e-76 290.0 444 40.5
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 3.6e-73 280.0 461 41.0
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.1e-73 279.3 339 49.0
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 1.4e-72 278.1 316 48.7
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.5e-71 274.6 378 43.9
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 3.3e-71 273.5 348 46.0
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.4e-69 268.1 341 45.7
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 1.8e-69 267.7 347 45.8
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 1.3e-67 261.5 491 38.1
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.7e-67 261.2 412 40.8
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.7e-64 249.2 305 48.2
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 8.5e-59 232.3 289 46.0
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 8.5e-59 232.3 301 45.5
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 3.6e-57 226.9 275 49.8
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.8e-56 224.6 313 46.0
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 8.8e-56 222.2 305 42.3
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 9.1e-53 212.2 461 34.5
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 8.0e-49 199.1 254 49.6
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 4.4e-47 193.4 167 58.7
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 5.7e-47 193.0 227 51.5
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 4.1e-45 186.8 277 43.0
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 2.5e-42 177.6 160 60.6
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 3.4e-39 167.2 377 33.4
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 5.7e-31 139.8 391 31.2
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 6.4e-30 136.3 201 39.8
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 6.4e-30 136.3 367 31.9
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 4.1e-29 133.7 204 40.2
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 5.8e-23 113.2 384 28.6
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 1.3e-22 112.1 171 47.4
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 3.7e-22 110.5 170 44.7
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 1.3e-19 102.1 110 49.1
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 3.3e-18 97.4 211 32.2
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 4.3e-18 97.1 165 42.4
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 3.3e-10 70.9 195 30.8


User provided reference genes

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