Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 3.5e-151 538.5 318 100.0
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 3.8e-113 412.1 323 74.9
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 9.0e-107 391.0 327 71.3
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 5.5e-80 302.0 371 56.3
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 1.2e-79 300.8 353 53.0
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 1.9e-77 293.5 361 54.8
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 1.9e-77 293.5 327 57.2
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 5.3e-67 258.8 339 53.1
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 5.3e-67 258.8 339 53.1
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 1.5e-66 257.3 339 52.8
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 1.0e-65 254.6 150 82.7
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 5.5e-64 248.8 185 74.1
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 5.5e-64 248.8 185 74.1
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 9.4e-64 248.1 184 71.7
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 2.3e-62 243.4 321 50.8
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 3.2e-56 223.0 182 65.9
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 4.2e-56 222.6 153 72.5
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 3.6e-55 219.5 152 72.4
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 8.0e-55 218.4 158 70.3
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 3.9e-54 216.1 184 62.0
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 8.8e-54 214.9 152 70.4
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 2.6e-53 213.4 186 62.9
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 4.4e-53 212.6 186 62.4
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 7.4e-53 211.8 190 61.1
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 2.2e-52 210.3 176 62.5
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 3.7e-52 209.5 136 79.4
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 4.8e-52 209.1 190 59.5
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 6.3e-52 208.8 182 61.0
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 6.3e-52 208.8 199 59.3
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 1.1e-51 208.0 153 68.0
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 1.1e-51 208.0 209 56.9
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 1.4e-51 207.6 181 64.1
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 3.1e-51 206.5 177 59.9
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.2e-50 204.5 180 58.9
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 1.6e-50 204.1 298 44.0
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 2.0e-50 203.8 156 66.0
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 2.0e-50 203.8 199 54.8
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 2.6e-50 203.4 202 56.4
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 2.6e-50 203.4 184 59.2
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 5.9e-50 202.2 229 52.0
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 7.7e-50 201.8 231 51.9
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 3.8e-49 199.5 168 61.3
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 5.0e-49 199.1 182 58.2
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.5e-48 197.6 238 49.6
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 1.5e-48 197.6 224 54.5
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 1.5e-48 197.6 187 58.3
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 1.5e-48 197.6 187 58.3
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 1.9e-48 197.2 159 61.6
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 2.5e-48 196.8 185 58.4
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 2.5e-48 196.8 225 51.1
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 3.2e-48 196.4 201 55.2
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 4.2e-48 196.1 216 52.3
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 4.2e-48 196.1 325 43.7
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 9.4e-48 194.9 204 53.4
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 9.4e-48 194.9 239 49.4
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 1.2e-47 194.5 195 55.9
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 1.2e-47 194.5 239 49.0
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 1.6e-47 194.1 199 55.3
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 4.7e-47 192.6 226 50.0
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 6.1e-47 192.2 153 62.7
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 6.1e-47 192.2 187 56.7
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.0e-46 191.4 237 50.2
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.4e-46 191.0 225 49.8
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 3.0e-46 189.9 192 56.2
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 4.0e-46 189.5 196 55.1
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 4.0e-46 189.5 315 42.2
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 5.2e-46 189.1 233 48.5
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 5.2e-46 189.1 189 55.6
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 6.7e-46 188.7 199 53.3
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 8.8e-46 188.3 181 57.5
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 8.8e-46 188.3 255 48.6
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 1.2e-45 188.0 146 64.4
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 3.3e-45 186.4 210 52.9
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 3.3e-45 186.4 135 67.4
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 3.3e-45 186.4 181 55.2
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 9.7e-45 184.9 343 38.5
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 1.3e-44 184.5 150 60.7
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 2.2e-44 183.7 186 52.2
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 2.8e-44 183.3 141 63.1
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 3.7e-44 183.0 174 56.9
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 6.3e-44 182.2 145 63.4
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 8.3e-44 181.8 292 41.1
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 5.3e-43 179.1 178 55.1
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 7.0e-43 178.7 204 50.5
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 1.6e-42 177.6 166 58.4
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 2.0e-42 177.2 235 45.5
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 2.0e-42 177.2 190 51.6
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 2.0e-42 177.2 153 58.8
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 3.5e-42 176.4 146 68.5
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 5.9e-42 175.6 170 53.5
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 7.7e-42 175.3 231 48.5
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.0e-41 174.9 133 68.4
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.0e-41 174.9 270 43.3
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.7e-41 174.1 135 63.7
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 1.7e-41 174.1 185 53.5
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 5.0e-41 172.6 199 50.8
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 8.5e-41 171.8 200 50.5
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 1.1e-40 171.4 179 52.5
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 9.4e-40 168.3 290 40.3
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 1.6e-39 167.5 201 50.7
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 2.1e-39 167.2 200 50.0
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 2.7e-39 166.8 214 48.1
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 3.6e-39 166.4 143 60.1
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 4.7e-39 166.0 277 41.9
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.3e-38 163.7 155 58.7
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 2.3e-38 163.7 177 52.0
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.0e-38 163.3 152 59.9
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 6.8e-38 162.2 153 54.2
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 6.8e-38 162.2 166 54.8
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 8.8e-38 161.8 181 51.9
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 1.2e-37 161.4 136 61.0
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.5e-37 158.7 157 56.7
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.5e-37 158.7 157 56.7
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 9.8e-37 158.3 193 50.8
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 3.7e-36 156.4 183 50.3
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 4.8e-36 156.0 347 34.9
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 6.3e-36 155.6 347 34.9
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 8.3e-36 155.2 170 52.4
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 9.1e-35 151.8 188 47.9
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.0e-33 148.3 135 56.3
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 5.0e-33 146.0 189 46.0
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.9e-32 144.1 153 52.3
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 2.5e-32 143.7 133 56.4
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 4.7e-31 139.4 133 54.9
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 3.0e-30 136.7 137 54.7
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 5.2e-30 136.0 155 54.2
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 1.2e-29 134.8 190 45.3
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 9.8e-29 131.7 203 40.9
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 9.8e-29 131.7 133 53.4
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 1.2e-26 124.8 140 52.9
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 5.6e-24 115.9 117 48.7
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 9.5e-24 115.2 101 62.4
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 8.3e-20 102.1 154 37.0
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 1.2e-18 98.2 92 56.5
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 2.1e-15 87.4 136 35.3
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 1.5e-13 81.3 101 48.5
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 5.8e-13 79.3 107 37.4
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 1.3e-12 78.2 205 32.2
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 4.9e-12 76.3 140 35.7
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 1.6e-10 71.2 83 47.0
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 3.0e-09 67.0 209 31.1
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 3.0e-09 67.0 57 56.1
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 6.6e-09 65.9 213 29.6
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 1.1e-08 65.1 191 30.4


User provided reference genes

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