Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G51640 Arabidopsis lyrata HOM05D009227 ORTHO05D009956 8.9e-61 236.9 131 100.0
AT5G38790 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 6.8e-45 184.1 132 84.8
Carub.0007s3707 Capsella rubella HOM05D009227 ORTHO05D009956 5.8e-36 154.5 130 70.8
CARHR264020 Cardamine hirsuta HOM05D009227 ORTHO05D009956 1.3e-32 143.3 94 79.8
Aa31LG9G16880 Aethionema arabicum HOM05D009227 ORTHO05D009956 4.6e-25 118.2 107 64.5
SpUn1356_0010 Schrenkiella parvula HOM05D009227 ORTHO05D009956 2.3e-24 115.9 137 60.6
Carub.0009s0002 Capsella rubella HOM05D009227 ORTHO05D009956 3.3e-23 112.1 138 51.4
BcaC06g33727 Brassica carinata HOM05D009227 ORTHO05D009956 2.1e-22 109.4 112 56.2
C07p38630 Brassica napus HOM05D009227 ORTHO05D009956 2.1e-22 109.4 112 56.2
BolC7t44384H Brassica oleracea HOM05D009227 ORTHO05D009956 2.1e-22 109.4 112 56.2
Sp2g18210 Schrenkiella parvula HOM05D009227 ORTHO05D009956 2.8e-22 109.0 112 55.4
A06p39660 Brassica napus HOM05D009227 ORTHO05D009956 3.7e-22 108.6 112 56.2
BraA06t26881Z Brassica rapa HOM05D009227 ORTHO05D009956 3.7e-22 108.6 112 56.2
BcaC06g30842 Brassica carinata HOM05D009227 ORTHO05D009956 2.4e-21 105.9 112 55.4
Thhalv10027989m.g Eutrema salsugineum HOM05D009227 ORTHO05D009956 6.9e-21 104.4 137 55.5
Thhalv10005597m.g Eutrema salsugineum HOM05D009227 ORTHO05D009956 1.0e-19 100.5 110 53.6
THA.LOC104805540 Tarenaya hassleriana HOM05D009227 ORTHO05D009956 2.5e-18 95.9 146 43.2
BcaB07g30061 Brassica carinata HOM05D009227 ORTHO05D009956 3.2e-18 95.5 91 58.2
A02p37090 Brassica napus HOM05D009227 ORTHO05D009956 7.1e-18 94.4 91 58.2
BraA02t08695Z Brassica rapa HOM05D009227 ORTHO05D009956 7.1e-18 94.4 91 58.2
C02p56090 Brassica napus HOM05D009227 ORTHO05D009956 9.3e-18 94.0 91 57.1
BolC2t11666H Brassica oleracea HOM05D009227 ORTHO05D009956 9.3e-18 94.0 91 57.1
AT3G30580 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 1.1e-15 87.0 111 51.4
BraA04t16832Z Brassica rapa HOM05D009227 ORTHO05D009956 5.7e-15 84.7 137 43.8
A04p11640 Brassica napus HOM05D009227 ORTHO05D009956 1.3e-14 83.6 137 43.1
BcaC02g09668 Brassica carinata HOM05D009227 ORTHO05D009956 4.1e-13 78.6 137 43.8
C04p45370 Brassica napus HOM05D009227 ORTHO05D009956 4.1e-13 78.6 137 43.8
BolC4t26119H Brassica oleracea HOM05D009227 ORTHO05D009956 4.1e-13 78.6 137 43.8
BcaB06g27244 Brassica carinata HOM05D009227 ORTHO05D009956 5.3e-13 78.2 137 41.6
Potri.017G107000 Populus trichocarpa HOM05D008889 ORTHO05D009956 1.9e-10 69.7 77 50.6
FvH4_6g45950 Fragaria vesca HOM05D008889 ORTHO05D009956 1.6e-09 66.6 74 45.9
FAN02G0304 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.6e-09 66.6 74 45.9
FAN14G5446 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.6e-09 66.6 74 45.9
RcHm_v2.0_Chr2g0164181 Rosa chinensis HOM05D008889 ORTHO05D009956 1.6e-09 66.6 74 45.9
FAN05G4365 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.0e-08 63.9 107 37.4
Sed0012187 Sechium edule HOM05D008563 ORTHO05D009802 3.9e-08 62.0 86 48.8
FAN09G2052 Fragaria x ananassa HOM05D008889 ORTHO05D009956 5.1e-08 61.6 107 35.5
Potri.004G108840 Populus trichocarpa HOM05D008889 ORTHO05D009956 5.1e-08 61.6 75 46.7
TPR.G3280 Trifolium pratense HOM05D008889 ORTHO05D009956 8.7e-08 60.8 101 42.6
unitig_744.g24288 Utricularia gibba HOM05D009227 ORTHO05D009956 1.5e-07 60.1 67 49.3
Medtr2g058870 Medicago truncatula HOM05D008563 ORTHO05D009956 1.9e-07 59.7 101 40.6
MD17G1069000 Malus domestica HOM05D008889 ORTHO05D009956 7.4e-07 57.8 97 41.2
Prupe.3G245600 Prunus persica HOM05D008889 ORTHO05D009956 1.3e-06 57.0 98 40.8
Manes.01G105700 Manihot esculenta HOM05D008889 ORTHO05D009956 1.6e-06 56.6 103 39.8
Oeu024138.1 Olea europaea HOM05D011353 ORTHO05D009956 2.2e-06 56.2 74 50.0
Sed0005169 Sechium edule HOM05D008563 ORTHO05D009802 2.2e-06 56.2 89 46.1
CSS0034251 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 2.8e-06 55.8 100 44.0
CSS0042453 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 2.8e-06 55.8 100 44.0
Ciclev10013380m.g Citrus clementina HOM05D008889 ORTHO05D009956 2.8e-06 55.8 113 38.9
QL02p063786 Quercus lobata HOM05D009227 ORTHO05D009956 2.8e-06 55.8 83 44.6
Sabra04G0073700 Salix brachista HOM05D008889 ORTHO05D009956 3.7e-06 55.5 72 44.4
Gohir.A08G052300 Gossypium hirsutum HOM05D008889 ORTHO05D009956 4.8e-06 55.1 90 46.7
Manes.02G062300 Manihot esculenta HOM05D008889 ORTHO05D009956 4.8e-06 55.1 96 39.6
Sabra17G0089900 Salix brachista HOM05D008889 ORTHO05D009956 4.8e-06 55.1 125 36.0
Gorai.004G064000 Gossypium raimondii HOM05D009227 ORTHO05D009956 6.3e-06 54.7 70 48.6
Ca_23534_v3 Cicer arietinum L. HOM05D008889 ORTHO05D009956 8.2e-06 54.3 95 42.1


User provided reference genes

Program Settings