Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 3.6e-123 444.9 218 100.0
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 5.9e-118 427.6 218 95.0
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 2.1e-115 419.1 218 92.2
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 7.3e-108 394.0 218 85.3
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.7e-104 382.9 218 83.0
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 4.9e-104 381.3 218 82.6
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 4.9e-104 381.3 218 83.0
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 6.4e-104 380.9 218 83.0
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 2.4e-103 379.0 218 82.6
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 2.4e-103 379.0 218 82.6
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.7e-102 375.6 218 81.2
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 1.7e-101 372.9 209 84.2
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 8.9e-98 360.5 218 79.4
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 7.0e-95 350.9 209 78.0
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 8.1e-91 337.4 213 72.8
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 2.0e-89 332.8 216 70.4
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.3e-88 330.1 216 70.4
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.3e-88 330.1 216 69.4
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 8.3e-88 327.4 217 70.0
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.1e-87 327.0 216 68.1
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.1e-87 327.0 216 68.1
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 2.4e-87 325.9 214 69.2
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 5.4e-87 324.7 217 66.4
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 7.1e-87 324.3 213 69.5
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 9.2e-87 323.9 219 69.4
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 3.5e-86 322.0 216 66.7
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 3.5e-86 322.0 217 70.0
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 4.6e-86 321.6 213 69.5
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.0e-85 320.5 216 67.1
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.0e-85 320.5 216 68.1
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.7e-85 319.7 218 67.0
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 5.1e-85 318.2 218 65.6
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 6.6e-85 317.8 216 66.2
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 1.1e-84 317.0 216 69.0
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 1.1e-84 317.0 216 66.7
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 1.9e-84 316.2 218 65.6
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 3.3e-84 315.5 212 66.5
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 4.3e-84 315.1 217 65.9
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 4.3e-84 315.1 217 65.9
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 9.5e-84 313.9 216 64.8
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.1e-83 312.8 215 66.5
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 4.7e-83 311.6 212 67.9
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 4.7e-83 311.6 216 67.6
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.1e-82 310.5 212 65.1
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.8e-82 309.7 217 67.3
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 3.1e-82 308.9 217 66.8
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 5.2e-82 308.1 211 66.8
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 8.9e-82 307.4 220 66.8
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 8.9e-82 307.4 212 64.6
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.5e-81 306.6 212 65.6
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.5e-81 306.6 214 66.8
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 2.0e-81 306.2 211 67.8
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 2.6e-81 305.8 216 64.8
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 3.4e-81 305.4 218 63.8
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 4.4e-81 305.1 218 65.1
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.8e-81 304.7 216 64.8
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 5.8e-81 304.7 216 63.4
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.7e-80 303.1 213 63.8
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 2.2e-80 302.8 211 65.4
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 2.2e-80 302.8 213 66.7
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 3.8e-80 302.0 213 66.2
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 4.9e-80 301.6 218 62.8
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 4.9e-80 301.6 216 66.7
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 8.4e-80 300.8 213 66.7
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 1.1e-79 300.4 218 62.8
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.1e-79 300.4 208 67.3
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 2.4e-79 299.3 216 66.2
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 3.2e-79 298.9 216 64.8
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 4.1e-79 298.5 217 62.7
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 4.1e-79 298.5 216 65.3
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 5.4e-79 298.1 216 65.7
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 5.4e-79 298.1 208 66.8
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 9.2e-79 297.4 213 65.3
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 9.2e-79 297.4 213 64.8
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 9.2e-79 297.4 214 64.0
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 2.1e-78 296.2 217 63.6
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 3.5e-78 295.4 213 65.7
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.6e-78 295.0 216 64.8
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.3e-77 292.7 216 61.1
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 3.0e-77 292.4 216 62.0
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 6.6e-77 291.2 219 62.6
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 8.6e-77 290.8 214 63.1
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 1.1e-76 290.4 218 63.8
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.5e-76 290.0 216 63.0
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.9e-76 289.7 248 56.5
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 2.5e-76 289.3 210 63.8
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 2.8e-75 285.8 216 62.0
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 3.6e-75 285.4 213 63.4
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.6e-75 285.4 227 59.5
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 6.2e-75 284.6 213 62.9
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 2.4e-74 282.7 213 61.5
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 4.0e-74 282.0 218 60.1
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 2.6e-73 279.3 213 60.6
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.3e-72 276.9 219 60.7
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 2.2e-72 276.2 191 64.9
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.8e-72 275.4 216 58.8
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.5e-70 268.9 199 61.3
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 3.5e-70 268.9 214 58.9
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 7.8e-70 267.7 205 62.0
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.0e-69 265.8 204 57.8
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.5e-68 263.5 217 55.3
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 2.4e-66 256.1 178 64.6
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 3.4e-65 252.3 207 55.6
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 5.8e-65 251.5 208 51.9
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.3e-64 250.4 202 58.9
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.5e-62 242.3 194 59.8
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 7.9e-62 241.1 193 57.0
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 3.0e-61 239.2 205 54.1
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.5e-60 236.9 170 63.5
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 7.4e-60 234.6 211 49.3
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.2e-57 227.3 146 66.4
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.5e-57 226.9 204 52.0
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 6.4e-56 221.5 210 54.3
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 1.2e-54 217.2 210 50.5
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 7.9e-54 214.5 144 64.6
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.3e-53 213.8 210 51.0
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 5.1e-53 211.8 194 50.5
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 2.1e-51 206.5 140 66.4
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 8.1e-51 204.5 144 61.1
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.1e-50 202.6 211 49.3
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 4.2e-47 192.2 210 43.8
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.6e-46 190.3 126 65.9
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.0e-46 188.3 240 44.6
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.0e-45 187.6 171 52.0
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.3e-45 186.4 199 48.2
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.0e-40 171.0 163 49.7
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.3e-36 155.6 205 41.5
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.7e-32 143.7 110 60.9
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 1.9e-31 140.2 110 60.9
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 7.2e-31 138.3 202 38.1
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 5.7e-28 128.6 68 88.2
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.8e-26 123.6 75 68.0
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 2.2e-24 116.7 234 32.1
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.2e-23 112.5 203 36.0
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 7.2e-23 111.7 138 44.2
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 4.4e-20 102.4 215 28.4
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 9.7e-20 101.3 76 65.8
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 1.7e-19 100.5 72 65.3
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 6.3e-19 98.6 209 30.1
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 2.6e-17 93.2 116 41.4
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 2.6e-17 93.2 116 41.4
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.7e-16 90.5 116 39.7
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 1.2e-14 84.3 84 57.1
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 2.1e-14 83.6 180 28.3
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 3.6e-14 82.8 84 56.0
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 4.7e-14 82.4 208 28.8
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.8e-13 80.5 56 58.9
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.0e-13 79.7 84 47.6
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 6.7e-13 78.6 108 43.5
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.3e-11 74.3 50 64.0
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 5.3e-10 68.9 40 77.5
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 2.7e-09 66.6 189 24.9
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 5.9e-09 65.5 47 66.0


User provided reference genes

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