Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G50890 Arabidopsis lyrata HOM05D001294 ORTHO05D001178 8.8e-44 179.9 89 100.0
Thhalv10013548m.g Eutrema salsugineum HOM05D001294 ORTHO05D001178 3.8e-15 84.7 141 39.7
AL6G29790 Arabidopsis lyrata HOM05D001294 ORTHO05D001178 1.5e-14 82.8 46 73.9
AT5G18520 Arabidopsis thaliana HOM05D001294 ORTHO05D001178 1.5e-14 82.8 46 73.9
CARHR194500 Cardamine hirsuta HOM05D001294 ORTHO05D001178 1.5e-14 82.8 139 38.8
BcaB05g23334 Brassica carinata HOM05D001294 ORTHO05D001178 2.5e-14 82.0 56 62.5
Sp6g25810 Schrenkiella parvula HOM05D001294 ORTHO05D001178 7.2e-14 80.5 139 38.8
C03p10390 Brassica napus HOM05D001294 ORTHO05D001178 1.2e-13 79.7 46 71.7
BolC3t13519H Brassica oleracea HOM05D001294 ORTHO05D001178 1.2e-13 79.7 46 71.7
BraA03t10217Z Brassica rapa HOM05D001294 ORTHO05D001178 1.2e-13 79.7 46 71.7
A03p08910 Brassica napus HOM05D001294 ORTHO05D001178 1.6e-13 79.3 46 71.7
Carub.0006s1679 Capsella rubella HOM05D001294 ORTHO05D001178 1.6e-13 79.3 139 38.8
BcaC03g13605 Brassica carinata HOM05D001294 ORTHO05D001178 4.7e-13 77.8 46 69.6
A02p04960 Brassica napus HOM05D001294 ORTHO05D001178 4.7e-13 77.8 46 69.6
C02p09940 Brassica napus HOM05D001294 ORTHO05D001178 4.7e-13 77.8 46 69.6
BolC2t06901H Brassica oleracea HOM05D001294 ORTHO05D001178 4.7e-13 77.8 46 69.6
BraA02t05455Z Brassica rapa HOM05D001294 ORTHO05D001178 4.7e-13 77.8 46 69.6
Aa31LG11G11090 Aethionema arabicum HOM05D001294 ORTHO05D001178 8.0e-13 77.0 46 69.6
BcaB08g36670 Brassica carinata HOM05D001294 ORTHO05D001178 1.0e-12 76.6 46 67.4
BcaC04g18672 Brassica carinata HOM05D001294 ORTHO05D001178 1.0e-12 76.6 46 67.4
A10p21040 Brassica napus HOM05D001294 ORTHO05D001178 1.0e-12 76.6 46 67.4
BolC9t58664H Brassica oleracea HOM05D001294 ORTHO05D001178 1.0e-12 76.6 46 67.4
BraA10t44168Z Brassica rapa HOM05D001294 ORTHO05D001178 1.0e-12 76.6 46 67.4
Potri.016G081300 Populus trichocarpa HOM05D001294 ORTHO05D001178 1.0e-12 76.6 56 58.9
Ca_09588_v3 Cicer arietinum L. HOM05D001294 ORTHO05D001178 1.8e-12 75.9 46 65.2
THA.LOC104805384 Tarenaya hassleriana HOM05D001294 ORTHO05D001178 1.8e-12 75.9 46 69.6
C09p57970 Brassica napus HOM05D001294 ORTHO05D001178 2.3e-12 75.5 46 65.2
Medtr1g067370 Medicago truncatula HOM05D001294 ORTHO05D001178 3.0e-12 75.1 46 65.2
Sabra16G0089300 Salix brachista HOM05D001294 ORTHO05D001178 4.0e-12 74.7 46 67.4
DCAR_014948 Daucus carota HOM05D001294 ORTHO05D001178 8.9e-12 73.6 46 63.0
Lj5g0014018 Lotus japonicus HOM05D001294 ORTHO05D001178 1.2e-11 73.2 44 65.9
Medtr7g100360 Medicago truncatula HOM05D001294 ORTHO05D001178 1.2e-11 73.2 46 60.9
Psat3g048040 Pisum sativum HOM05D001294 ORTHO05D001178 1.2e-11 73.2 46 63.0
Phvul.001G172000 Phaseolus vulgaris HOM05D001294 ORTHO05D001178 1.5e-11 72.8 46 63.0
THA.LOC104806510 Tarenaya hassleriana HOM05D001294 ORTHO05D001178 1.5e-11 72.8 46 65.2
Psat6g069480 Pisum sativum HOM05D001294 ORTHO05D001178 2.0e-11 72.4 46 63.0
Sabra06G0165900 Salix brachista HOM05D001294 ORTHO05D001178 2.0e-11 72.4 44 68.2
Nitab4.5_0000202g0320 Nicotiana tabacum HOM05D001294 ORTHO05D001178 3.4e-11 71.6 46 60.9
Nitab4.5_0006713g0040 Nicotiana tabacum HOM05D001294 ORTHO05D001178 3.4e-11 71.6 46 60.9
QL07p046074 Quercus lobata HOM05D001294 ORTHO05D001178 3.4e-11 71.6 46 63.0
EL10Ac7g17280 Beta vulgaris HOM05D001294 ORTHO05D001178 4.4e-11 71.2 46 65.2
Haze_20702 Corylus avellana HOM05D001294 ORTHO05D001178 4.4e-11 71.2 46 60.9
MELO3C003086.2 Cucumis melo HOM05D001294 ORTHO05D001178 4.4e-11 71.2 46 60.9
CsaV3_4G024540 Cucumis sativus L. HOM05D001294 ORTHO05D001178 4.4e-11 71.2 46 60.9
TPR.G10538 Trifolium pratense HOM05D001294 ORTHO05D001178 4.4e-11 71.2 46 60.9
Glyma.03G175000 Glycine max HOM05D001294 ORTHO05D001178 5.7e-11 70.9 46 63.0
Glyma.19G175700 Glycine max HOM05D001294 ORTHO05D001178 5.7e-11 70.9 46 63.0
VMungo1383G2707 Vigna mungo HOM05D001294 ORTHO05D001178 5.7e-11 70.9 46 63.0
Atru.chr8.2499 Acer truncatum HOM05D001294 ORTHO05D001178 7.5e-11 70.5 46 63.0
Ca_08802_v3 Cicer arietinum L. HOM05D001294 ORTHO05D001178 7.5e-11 70.5 46 60.9
CANSAT80G1388 Cannabis sativa HOM05D001294 ORTHO05D001178 9.8e-11 70.1 46 58.7
Lalb_Chr20g0113071 Lupinus albus HOM05D001294 ORTHO05D001178 9.8e-11 70.1 46 60.9
THA.LOC104827000 Tarenaya hassleriana HOM05D001294 ORTHO05D001178 9.8e-11 70.1 44 68.2
TWI74G1677 Tripterygium wilfordii HOM05D001294 ORTHO05D001178 9.8e-11 70.1 46 60.9
Ah.08g212340 Amaranthus hybridus HOM05D001294 ORTHO05D001178 1.3e-10 69.7 46 63.0
Ah.08g212350 Amaranthus hybridus HOM05D001294 ORTHO05D001178 1.3e-10 69.7 46 63.0
AUR62041002 Chenopodium quinoa HOM05D001294 ORTHO05D001178 1.3e-10 69.7 46 63.0
AUR62042137 Chenopodium quinoa HOM05D001294 ORTHO05D001178 1.3e-10 69.7 46 63.0
Ciclev10011742m.g Citrus clementina HOM05D001294 ORTHO05D001178 1.3e-10 69.7 46 58.7
PGR004G1586 Punica granatum HOM05D001294 ORTHO05D001178 1.3e-10 69.7 46 58.7
Sopen10g033950 Solanum pennellii HOM05D001294 ORTHO05D001178 1.3e-10 69.7 46 60.9
Lj2C103T7 Lonicera japonica HOM05D001294 ORTHO05D001178 1.7e-10 69.3 46 63.0
Lj3A975T66 Lonicera japonica HOM05D001294 ORTHO05D001178 1.7e-10 69.3 46 63.0
Lj1g0007808 Lotus japonicus HOM05D001294 ORTHO05D001178 1.7e-10 69.3 46 58.7
PGSC0003DMG400011055 Solanum tuberosum HOM05D001294 ORTHO05D001178 1.7e-10 69.3 46 58.7
SGA_v2.0_scaffold126G33858 Striga asiatica HOM05D001294 ORTHO05D001178 1.7e-10 69.3 46 58.7
DCAR_020864 Daucus carota HOM05D001294 ORTHO05D001178 2.2e-10 68.9 46 56.5
Lalb_Chr06g0171121 Lupinus albus HOM05D001294 ORTHO05D001178 2.2e-10 68.9 46 58.7
Manes.09G088000 Manihot esculenta HOM05D001294 ORTHO05D001178 2.2e-10 68.9 46 60.9
Nitab4.5_0000643g0120 Nicotiana tabacum HOM05D001294 ORTHO05D001178 2.2e-10 68.9 46 58.7
CAN.G1117.4 Capsicum annuum HOM05D001294 ORTHO05D001178 2.8e-10 68.6 46 60.9
Dinv35669 Davidia involucrata HOM05D001294 ORTHO05D001178 2.8e-10 68.6 46 58.7
Duzib128G0805 Durio zibethinus HOM05D001294 ORTHO05D001178 2.8e-10 68.6 46 60.9
Nitab4.5_0002774g0010 Nicotiana tabacum HOM05D001294 ORTHO05D001178 2.8e-10 68.6 46 56.5
Potri.006G214900 Populus trichocarpa HOM05D001294 ORTHO05D001178 2.8e-10 68.6 46 58.7
Solyc09g005920.4 Solanum lycopersicum HOM05D001294 ORTHO05D001178 2.8e-10 68.6 46 56.5
SGA_v2.0_scaffold75G24907 Striga asiatica HOM05D001294 ORTHO05D001178 2.8e-10 68.6 46 58.7
TAR633G0681 Trochodendron aralioides HOM05D001294 ORTHO05D001178 2.8e-10 68.6 46 56.5
unitig_578.g15711 Utricularia gibba HOM05D001294 ORTHO05D001178 2.8e-10 68.6 46 60.9
Cfa017458 Carpinus fangiana HOM05D001294 ORTHO05D001178 3.7e-10 68.2 46 63.0
CiPaw.09G186300 Carya illinoinensis HOM05D001294 ORTHO05D001178 4.9e-10 67.8 46 60.9
ClCG04G008620 Citrullus lanatus HOM05D001294 ORTHO05D001178 4.9e-10 67.8 46 58.7
Migut.J00388 Erythranthe guttata HOM05D001294 ORTHO05D001178 4.9e-10 67.8 46 58.7
FAN05G0008 Fragaria x ananassa HOM05D001294 ORTHO05D001178 4.9e-10 67.8 46 60.9
Sed0027112 Sechium edule HOM05D001294 ORTHO05D001178 4.9e-10 67.8 46 58.7
Thecc.05G048200 Theobroma cacao HOM05D001294 ORTHO05D001178 4.9e-10 67.8 46 58.7
SalBow3G4336 Salvia bowleyana HOM05D001294 ORTHO05D001178 6.3e-10 67.4 46 58.7
Sopen09g001780 Solanum pennellii HOM05D001294 ORTHO05D001178 6.3e-10 67.4 46 54.3
MSTRG.5702 Avicennia marina HOM05D001294 ORTHO05D001178 8.3e-10 67.0 46 58.7
Dinv37226 Davidia involucrata HOM05D001294 ORTHO05D001178 8.3e-10 67.0 46 56.5
Duzib093G1927 Durio zibethinus HOM05D001294 ORTHO05D001178 8.3e-10 67.0 46 58.7
ECA233G1710 Erigeron canadensis HOM05D001294 ORTHO05D001178 8.3e-10 67.0 46 56.5
FAN02G3032 Fragaria x ananassa HOM05D001294 ORTHO05D001178 8.3e-10 67.0 46 60.9
Oeu035169.1 Olea europaea HOM05D001294 ORTHO05D001178 8.3e-10 67.0 46 58.7
RcHm_v2.0_Chr3g0467951 Rosa chinensis HOM05D001294 ORTHO05D001178 8.3e-10 67.0 46 58.7
SHI12651 Sapria himalayana HOM05D001294 ORTHO05D001178 8.3e-10 67.0 46 60.9
HanXRQChr13g0399121 Helianthus annuus HOM05D001294 ORTHO05D001178 1.1e-09 66.6 46 56.5
MD04G1116700 Malus domestica HOM05D001294 ORTHO05D001178 1.1e-09 66.6 46 54.3
Prupe.6G246500 Prunus persica HOM05D001294 ORTHO05D001178 1.1e-09 66.6 46 56.5
TWI53G1505 Tripterygium wilfordii HOM05D001294 ORTHO05D001178 1.1e-09 66.6 46 56.5
vmacro08677 Vaccinium macrocarpon HOM05D001294 ORTHO05D001178 1.1e-09 66.6 38 68.4
FvH4_6g14730 Fragaria vesca HOM05D001294 ORTHO05D001178 1.4e-09 66.2 46 58.7
FAN14G3897 Fragaria x ananassa HOM05D001294 ORTHO05D001178 1.4e-09 66.2 46 58.7
Lsat_1_v5_gn_6_33040 Lactuca sativa HOM05D001294 ORTHO05D001178 1.4e-09 66.2 46 56.5
Sabra16G0090600 Salix brachista HOM05D001294 ORTHO05D001178 1.4e-09 66.2 46 60.9
Oeu023877.2 Olea europaea HOM05D001294 ORTHO05D001178 1.8e-09 65.9 46 58.7
FAN09G3814 Fragaria x ananassa HOM05D001294 ORTHO05D001178 2.4e-09 65.5 46 58.7
MD12G1132400 Malus domestica HOM05D001294 ORTHO05D001178 2.4e-09 65.5 46 54.3
Sp3g07920 Schrenkiella parvula HOM05D001294 ORTHO05D001178 2.4e-09 65.5 46 58.7
Gohir.A09G159900 Gossypium hirsutum HOM05D001294 ORTHO05D001178 3.1e-09 65.1 46 56.5
Gohir.D09G155500 Gossypium hirsutum HOM05D001294 ORTHO05D001178 3.1e-09 65.1 46 56.5
Gorai.006G176900 Gossypium raimondii HOM05D001294 ORTHO05D001178 3.1e-09 65.1 46 56.5
unitig_22.g5079 Utricularia gibba HOM05D001294 ORTHO05D001178 3.1e-09 65.1 46 56.5
Aa31LG3G2020 Aethionema arabicum HOM05D001294 ORTHO05D001178 4.1e-09 64.7 46 58.7
Carub.0003s0866 Capsella rubella HOM05D001294 ORTHO05D001178 5.4e-09 64.3 46 56.5
BcaC05g29685 Brassica carinata HOM05D001294 ORTHO05D001178 9.2e-09 63.5 46 56.5
CARHR083980 Cardamine hirsuta HOM05D001294 ORTHO05D001178 9.2e-09 63.5 46 56.5
AT3G09570 Arabidopsis thaliana HOM05D001294 ORTHO05D001178 1.2e-08 63.2 46 54.3
Peaxi162Scf00039g00429 Petunia axillaris HOM05D001294 ORTHO05D001178 1.2e-08 63.2 46 52.2
Sc01g0003820 Simmondsia chinensis HOM05D001294 ORTHO05D001178 1.2e-08 63.2 46 56.5
AT5G02630 Arabidopsis thaliana HOM05D001294 ORTHO05D001178 1.6e-08 62.8 44 56.8
Phvul.007G160700 Phaseolus vulgaris HOM05D001294 ORTHO05D001178 1.6e-08 62.8 42 57.1
PGSC0003DMG400023915 Solanum tuberosum HOM05D001294 ORTHO05D001178 1.6e-08 62.8 46 52.2
CiPaw.16G021500 Carya illinoinensis HOM05D001294 ORTHO05D001178 2.0e-08 62.4 46 56.5
HanXRQChr02g0053021 Helianthus annuus HOM05D001294 ORTHO05D001178 2.7e-08 62.0 61 45.9
Hma1.2p1_0350F.1_g132540 Hydrangea macrophylla HOM05D001294 ORTHO05D001178 2.7e-08 62.0 46 52.2
Lsat_1_v5_gn_1_54801 Lactuca sativa HOM05D001294 ORTHO05D001178 2.7e-08 62.0 46 52.2
C05p58500 Brassica napus HOM05D001294 ORTHO05D001178 3.5e-08 61.6 46 54.3
BolC5t34501H Brassica oleracea HOM05D001294 ORTHO05D001178 3.5e-08 61.6 46 54.3
Sed0013144 Sechium edule HOM05D001294 ORTHO05D001178 3.5e-08 61.6 46 52.2
A05p39480 Brassica napus HOM05D001294 ORTHO05D001178 4.5e-08 61.2 46 54.3
BraA05t22729Z Brassica rapa HOM05D001294 ORTHO05D001178 4.5e-08 61.2 46 54.3
VMungo0720G0331 Vigna mungo HOM05D001294 ORTHO05D001178 4.5e-08 61.2 42 54.8
AL6G11920 Arabidopsis lyrata HOM05D001294 ORTHO05D001178 5.9e-08 60.8 44 56.8
Eucgr.G02451 Eucalyptus grandis HOM05D001294 ORTHO05D001178 5.9e-08 60.8 46 52.2
HanXRQChr02g0052961 Helianthus annuus HOM05D001294 ORTHO05D001178 5.9e-08 60.8 40 57.5
Hma1.2p1_0111F.1_g053350 Hydrangea macrophylla HOM05D001294 ORTHO05D001178 5.9e-08 60.8 49 51.0
MSTRG.19115 Avicennia marina HOM05D001294 ORTHO05D001178 7.8e-08 60.5 83 42.2
Oeu060065.1 Olea europaea HOM05D001294 ORTHO05D001178 7.8e-08 60.5 46 54.3
TPR.G40294 Trifolium pratense HOM05D001294 ORTHO05D001178 7.8e-08 60.5 46 47.8
Actinidia11239 Actinidia chinensis HOM05D001294 ORTHO05D001178 1.0e-07 60.1 46 50.0
Glyma.10G046600 Glycine max HOM05D001294 ORTHO05D001178 1.0e-07 60.1 46 52.2
TAR369G0602 Trochodendron aralioides HOM05D001294 ORTHO05D001178 1.3e-07 59.7 78 41.0
PSO206G0050 Papaver somniferum HOM05D001294 ORTHO05D001178 2.3e-07 58.9 46 45.7
PSO699G0008 Papaver somniferum HOM05D001294 ORTHO05D001178 2.3e-07 58.9 46 45.7
AL3G20740 Arabidopsis lyrata HOM05D001294 ORTHO05D001178 2.9e-07 58.5 46 50.0
Gohir.A04G078000 Gossypium hirsutum HOM05D001294 ORTHO05D001178 3.9e-07 58.2 46 50.0
Gorai.009G422200 Gossypium raimondii HOM05D001294 ORTHO05D001178 3.9e-07 58.2 46 50.0
Nn2g10541 Nelumbo nucifera HOM05D001294 ORTHO05D001178 3.9e-07 58.2 46 47.8
CSS0016730 Camellia sinensis var. sinensis HOM05D001294 ORTHO05D001178 5.0e-07 57.8 46 50.0
Eucgr.K02574 Eucalyptus grandis HOM05D001294 ORTHO05D001178 5.0e-07 57.8 56 46.4
Medtr1g025450 Medicago truncatula HOM05D000069 ORTHO05D001178 5.0e-07 57.8 44 54.5
TPR.G30400 Trifolium pratense HOM05D001294 ORTHO05D001178 5.0e-07 57.8 47 51.1
Cc06_g03210 Coffea canephora HOM05D001294 ORTHO05D001178 6.6e-07 57.4 46 52.2
Glyma.13G134600 Glycine max HOM05D001294 ORTHO05D001178 6.6e-07 57.4 44 54.5
Lsat_1_v5_gn_4_9460 Lactuca sativa HOM05D001294 ORTHO05D001178 6.6e-07 57.4 46 52.2
Hma1.2p1_0350F.1_g132550 Hydrangea macrophylla HOM05D001294 ORTHO05D001178 8.6e-07 57.0 46 52.2
Lsat_1_v5_gn_2_111400 Lactuca sativa HOM05D001294 ORTHO05D001178 1.1e-06 56.6 39 56.4
Gohir.D04G117200 Gossypium hirsutum HOM05D001294 ORTHO05D001178 1.5e-06 56.2 46 47.8
Nn2g12841 Nelumbo nucifera HOM05D001294 ORTHO05D001178 1.9e-06 55.8 46 45.7
Lsat_1_v5_gn_4_26840 Lactuca sativa HOM05D001294 ORTHO05D001178 2.5e-06 55.5 43 53.5
MBI14_g16290_MAGBIO Magnolia biondii HOM05D001294 ORTHO05D001178 2.5e-06 55.5 72 43.1


User provided reference genes

Program Settings